Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00005 and BL00080

See Amino acid alignment / Visit BSNT_00005 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence dna-align/BSNT_00005.1.5803.seq
#    -bsequence dna-align/BL00080___yaaB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00005-BL00080___yaaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00005-BL00080___yaaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00005
# 2: BL00080___yaaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 253
# Identity:     180/253 (71.1%)
# Similarity:   180/253 (71.1%)
# Gaps:          17/253 ( 6.7%)
# Score: 582.0
# 
#
#=======================================

BSNT_00005         1 TTGTATATTCATTTAGGTGATGACTTTGTGGTTTCAACACGAGATATTGT     50
                     ||||||||.||.||||||||.||.|||||.||.|||||.||.||.|||||
BL00080___yaa      1 TTGTATATCCACTTAGGTGACGATTTTGTCGTCTCAACGCGTGAAATTGT     50

BSNT_00005        51 CGGC-ATTTTTGACTTTA-AAGCCA---ACATGTCGCCTATTGTTGAAGA     95
                      ||| ||||||||  ||| |||.||   |||  |||||.||||||||.||
BL00080___yaa     51 -GGCTATTTTTGA--TTACAAGGCAAAGACA--TCGCCGATTGTTGAGGA     95

BSNT_00005        96 ATTTCTGAAAAAACAGAAACACAAGGTGGTGCCTTCCGTAAACGGCACGC    145
                     .|||.|.|..||.||.|||||...|.|.||..||||   .|||.||||||
BL00080___yaa     96 GTTTTTAAGCAAGCAAAAACAGCGGATTGTCTCTTC---TAACAGCACGC    142

BSNT_00005       146 CCAAATCTATCGTAGTCACGGTTCAGAAT--ATATATTACTCTCCCTTAT    193
                     |.||.||.||.||.|||||  .|.|.|||  ||.||||..|||||.|||.
BL00080___yaa    143 CGAAGTCAATTGTTGTCAC--ATTACAATCGATTTATTTTTCTCCTTTAG    190

BSNT_00005       194 CTTCCAGCACATTAAAAAAACGTGCGCAATTTATGTTTGAAATAGATTCT    243
                     |.||..||||.||.||||||||.|||||||..|.|...|||||.|||||.
BL00080___yaa    191 CCTCAGGCACGTTGAAAAAACGGGCGCAATCCAAGCCGGAAATCGATTCA    240

BSNT_00005       244 TAG    246
                     ||.
BL00080___yaa    241 TAA    243


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