Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00004 and BL00079
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_00004___recF.1.5803.seq
# -bsequence dna-align/BL00079___recF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00004___recF-BL00079___recF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00004___recF-BL00079___recF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00004___recF
# 2: BL00079___recF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1127
# Identity: 891/1127 (79.1%)
# Similarity: 891/1127 (79.1%)
# Gaps: 28/1127 ( 2.5%)
# Score: 3466.5
#
#
#=======================================
BSNT_00004___ 1 TTGTATATCCAGAA-CTTAGAACTT-TCATCTTACCGCAACTACGACCAT 48
|||||||||||.|| ||||.| || ||.||||||||.||.||.||.|
BL00079___rec 1 TTGTATATCCAAAATCTTACA--TTATCGTCTTACCGTAATTATGAGC-- 46
BSNT_00004___ 49 GC--TGAACTTCAATTTGAAAATAAAGTAAATGTGATCATCGGAGAAAAC 96
|| |||.|||||||||||.||.|||||.||.|||||.||||||||.|||
BL00079___rec 47 GCCTTGACCTTCAATTTGAGAACAAAGTGAACGTGATTATCGGAGAGAAC 96
BSNT_00004___ 97 GCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGT-CTTGTCCATGG 145
||.||.||.||.|||||..|.|||||.||||||||||| |||| |.||||
BL00079___rec 97 GCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTG-CGATGG 145
BSNT_00004___ 146 CGAAATCGCACCGGACATCAAATGACAAAGAACTTATACGGTGGGACAAA 195
|||||||.||.|||||.||||||||.||||||||.|||||.|||||..||
BL00079___rec 146 CGAAATCCCATCGGACGTCAAATGATAAAGAACTCATACGATGGGATGAA 195
BSNT_00004___ 196 GACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGC-GATCC 244
|||||||||||||||||.||.||.||.||.||..|||||||..| |.|||
BL00079___rec 196 GACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCTGTTCC 245
BSNT_00004___ 245 CGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCAT 294
| ||.|||||.||.||.||||||||.||.|||||.||.||.||.||||||
BL00079___rec 246 C-ATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCAT 294
BSNT_00004___ 295 ATTGAACAGCAAAAGCTCAGCCAGTATGTCGGGGCCCTCAACACCATTAT 344
|||||||||||.|||||.|||||||||||||||||..|||||||.|||||
BL00079___rec 295 ATTGAACAGCAGAAGCTGAGCCAGTATGTCGGGGCTGTCAACACGATTAT 344
BSNT_00004___ 345 GTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAA 394
||||||||||||.|||||||||||.|||||.|||||.|||||.||.||||
BL00079___rec 345 GTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAA 394
BSNT_00004___ 395 GGCGGTTTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCAT 444
|..|||||||.|||||||||||.||.||.||.||.||.||||||||||||
BL00079___rec 395 GAAGGTTTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCAT 444
BSNT_00004___ 445 GATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGGAATCATTTTTTGAA 494
||.||||||||||||||.|||||||||||.||.|||||||||||.|||||
BL00079___rec 445 GACCTTTCTCTTTACCAAAAAATCCTTTCACAACGGAATCATTTCTTGAA 494
BSNT_00004___ 495 ACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGA 544
.|||||.|||||.|||||.|||||.||.|..||||||||.||.||.||||
BL00079___rec 495 GCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGA 544
BSNT_00004___ 545 CCGATCAGCTTATAGAAGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAG 594
|.||.|||||||..|||.|.||.|||||.||.||..|.|||||.||.|||
BL00079___rec 545 CGGAACAGCTTACGGAATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAG 594
BSNT_00004___ 595 TTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCATCTC 644
|||...|..|||||.||.||||||||.||||||||.|||.|.||.||.||
BL00079___rec 595 TTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAATTTC 644
BSNT_00004___ 645 AAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTAT 694
||||||.||.|||||.||.||..|.||.||.|||||..|||||.|.||||
BL00079___rec 645 AAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTAT 694
BSNT_00004___ 695 CAGATCCCCTAGATTTGTCGAAAATAGGA--GATAGCTATCAAGAAGCGT 742
|||||.|.|..|||||||||||||| || .||||.|||||||||.|||
BL00079___rec 695 CAGATTCGCCCGATTTGTCGAAAAT--GATCAATAGTTATCAAGAAACGT 742
BSNT_00004___ 743 TTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGG 792
||||||||||||||||.||||||||.||.||.||.||..|.||.|||||.
BL00079___rec 743 TTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGT 792
BSNT_00004___ 793 CCTCATCGCGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGAC 842
||.||..|.||||||||||||||||||||.||.||.||.|||||||||||
BL00079___rec 793 CCCCACAGGGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGAC 842
BSNT_00004___ 843 GTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGTCCCTTAAGCTGG 892
.||.||.||.||.||.||||||||.|||||.||.|||||.|||||..|||
BL00079___rec 843 TTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGTCGCTTAAATTGG 892
BSNT_00004___ 893 CGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTA 942
|.||.||.|||.||||.||.|||||.||.||||||||.||.|||.|.||.
BL00079___rec 893 CTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTT 942
BSNT_00004___ 943 TTGGATGATGT----ACTGAGTGAACTGGATGATTATCGCCAGTCACACT 988
||||||||||| .|.||| |||||.||.|||||.|||||.||||
BL00079___rec 943 TTGGATGATGTTTTATCAGAG----CTGGACGACTATCGGCAGTCTCACT 988
BSNT_00004___ 989 TGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGC 1038
||||.||.||.||.||||||||.||.|||||.||.||.||||||||||||
BL00079___rec 989 TGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGC 1038
BSNT_00004___ 1039 GTTGATGGCATTGATCACGAAACCTT--ACGTCAAGCAGGAATGTTCCGT 1086
||||||||.||||||||..||||||| ||| ||||.|.|||.||.|||
BL00079___rec 1039 GTTGATGGAATTGATCATAAAACCTTAAACG--AAGCGGAAATCTTTCGT 1086
BSNT_00004___ 1087 GTGCAAAATGGTGCGTTAGTGAAGTGA 1113
||..|||||||..||.||..|.|.|||
BL00079___rec 1087 GTTGAAAATGGCACGCTATCGGACTGA 1113
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