Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00003 and BL00078
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_00003___yaaA.1.5803.seq
# -bsequence dna-align/BL00078___yaaA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00003___yaaA-BL00078___yaaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00003___yaaA-BL00078___yaaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00003___yaaA
# 2: BL00078___yaaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 217
# Identity: 175/217 (80.6%)
# Similarity: 175/217 (80.6%)
# Gaps: 2/217 ( 0.9%)
# Score: 695.0
#
#
#=======================================
BSNT_00003___ 1 ATGGCAAATCCGATTTCAATTGATACAGAGATGATTACACTCGGACAATT 50
|||.||||..||.|..|.||||||||||||||||||||.|||||.||.||
BL00078___yaa 1 ATGACAAAGACGGTGGCTATTGATACAGAGATGATTACCCTCGGCCAGTT 50
BSNT_00003___ 51 CTTAAAATTAGCCGATGTGATTCAGTCTGGCGGTATGGCGAAGTGGTTTT 100
.||.|||||.||.|||||.||||||||.||.||.|||||.||.|||||||
BL00078___yaa 51 TTTGAAATTGGCGGATGTCATTCAGTCCGGAGGAATGGCAAAATGGTTTT 100
BSNT_00003___ 101 TAAGCGAGCATGAAGTGCTTGTGAACGATGAGCCGGACAACCGCCGGGGC 150
||...||..|||||||.||.||.||.||.||||||||.||||||||.||.
BL00078___yaa 101 TATCGGAATATGAAGTACTCGTCAATGACGAGCCGGATAACCGCCGCGGA 150
BSNT_00003___ 151 AGAAAGCTGTATGTTGGAGATGTGGTAGA-GATTGAAGGATTTGGTTCAT 199
.||||.||||||||.||||||||||| || ||||||||||||.|||||||
BL00078___yaa 151 CGAAAACTGTATGTCGGAGATGTGGT-GACGATTGAAGGATTCGGTTCAT 199
BSNT_00003___ 200 TTCAAGTCGTCAATTAA 216
|||||||||||...|||
BL00078___yaa 200 TTCAAGTCGTCGGCTAA 216
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