Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00003 and BL00078

See Amino acid alignment / Visit BSNT_00003 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:39
# Commandline: needle
#    -asequence dna-align/BSNT_00003___yaaA.1.5803.seq
#    -bsequence dna-align/BL00078___yaaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00003___yaaA-BL00078___yaaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00003___yaaA-BL00078___yaaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00003___yaaA
# 2: BL00078___yaaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 217
# Identity:     175/217 (80.6%)
# Similarity:   175/217 (80.6%)
# Gaps:           2/217 ( 0.9%)
# Score: 695.0
# 
#
#=======================================

BSNT_00003___      1 ATGGCAAATCCGATTTCAATTGATACAGAGATGATTACACTCGGACAATT     50
                     |||.||||..||.|..|.||||||||||||||||||||.|||||.||.||
BL00078___yaa      1 ATGACAAAGACGGTGGCTATTGATACAGAGATGATTACCCTCGGCCAGTT     50

BSNT_00003___     51 CTTAAAATTAGCCGATGTGATTCAGTCTGGCGGTATGGCGAAGTGGTTTT    100
                     .||.|||||.||.|||||.||||||||.||.||.|||||.||.|||||||
BL00078___yaa     51 TTTGAAATTGGCGGATGTCATTCAGTCCGGAGGAATGGCAAAATGGTTTT    100

BSNT_00003___    101 TAAGCGAGCATGAAGTGCTTGTGAACGATGAGCCGGACAACCGCCGGGGC    150
                     ||...||..|||||||.||.||.||.||.||||||||.||||||||.||.
BL00078___yaa    101 TATCGGAATATGAAGTACTCGTCAATGACGAGCCGGATAACCGCCGCGGA    150

BSNT_00003___    151 AGAAAGCTGTATGTTGGAGATGTGGTAGA-GATTGAAGGATTTGGTTCAT    199
                     .||||.||||||||.||||||||||| || ||||||||||||.|||||||
BL00078___yaa    151 CGAAAACTGTATGTCGGAGATGTGGT-GACGATTGAAGGATTCGGTTCAT    199

BSNT_00003___    200 TTCAAGTCGTCAATTAA    216
                     |||||||||||...|||
BL00078___yaa    200 TTCAAGTCGTCGGCTAA    216


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.