Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04392 and BL00065
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04392.1.5803.seq
# -bsequence dna-align/BL00065___ytdP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04392-BL00065___ytdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04392-BL00065___ytdP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04392
# 2: BL00065___ytdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2402
# Identity: 825/2402 (34.3%)
# Similarity: 825/2402 (34.3%)
# Gaps: 1300/2402 (54.1%)
# Score: 2433.0
#
#
#=======================================
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 1 ATGAAGAGAAAACAATATAAGTTTTACTATAAACTGGTGACCTTCTTTCT 50
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 51 CATTCTGAGCACCATTCCGGTCATCATCGTCGGCTTTTTTTCCTATCAGA 100
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 101 GATCAGCGGAAACGATTGAACAAAACGTTACAAACGAAAAGCTCCAAACC 150
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 151 GTTAGCCAGACACAGCTAAATATTGAACATATTTTAAAAACGGTTGACCA 200
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 201 TTCCTTCACCAATTACGTCCGTTCCTATCCTTTAATTCAGACGCTCAGCC 250
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 251 GCACCATTACACCAGAACGCTTTCAGCTGTATAACCAAATCAACAAGGAA 300
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 301 TTAAACGAACTCCAGACATTCGATACCGATCTGTCGGATATCACGCTGAT 350
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 351 CAGCCAAGAAAAAAAGTGGTATATCAACAACTCCGGTTTATACCCTTTAG 400
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 401 ATCAGGGAAAACAAGCCATCACGCTCTCGCTTTACAACGCTTTAAAAAGC 450
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 451 CGTTCCAGCTGGGTGCTTGAAAAAAACAACGACCTTGTCGCCACAAAAGA 500
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 501 AGGGGCTTCGGGAAACTGCCTGTACAACGTCAATCTGGTCAAACAGCTTC 550
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 551 CCCTGAACAGCATGGAAAACAGAGGCCTTGCGATCGCGAGCATTCCTTCT 600
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 601 TGTTCGCTTGTCAAGCGCATGCCGGATCATTCAAAAACAAACAGCATGAT 650
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 651 GGTGCTTGATGACAACGGACGGATCATCCTTCACTCAGACCCGTCAATGA 700
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 701 TCGGGCAATCGATCAAACAAGAAAATTACTTCAAAACGATCCGCCGGCAC 750
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 751 CAAGAAAAAAACGGCCAGTTTGATACAACAGTCAGCGACACCGCCTATAA 800
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 801 CATTACATACCAGAAATCAGATTATAATAATTGGATATACGTTTCGTTAA 850
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 851 CGACCATTCCGGAACTCTATCAGCAGACGGCATCAATCGGCTGGTTCACG 900
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 901 TTTACGATCTGCCTCATTTTGTTAGCGCTTTCATATTTATTCTCCTGGTT 950
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 951 TGGTTCACGCCATTTTTACAGGCCGATCAAGGTTTTATACGAATCCGTCT 1000
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 1001 CCGGCTTTTCTCCAGGAGCCGATTCCGTCCAAGAGAAACCGAAAAACGAA 1050
BSNT_04392 0 -------------------------------------------------- 0
BL00065___ytd 1051 TTTGAACTGATTGAACGGAACATTAAAGAAATGAAAAATAAAAACCATGA 1100
BSNT_04392 1 -ATGAAG------------CAGCAGGCCACTCATCTGCAGCAATATTTTA 37
.||||| |||||||.|||.||.|||.||||.||||||.
BL00065___ytd 1101 TCTGAAGGTGCGCGTCGAACAGCAGGTCACCCAGCTGAAGCAGTATTTTT 1150
BSNT_04392 38 TGGTCAGGCTTATGCTTGGAAAACTGACGGATGAGGAGGTTGATAACCGT 87
|....|||||..||||.||.||.||||..||.||.||..|..|..||||.
BL00065___ytd 1151 TAACAAGGCTATTGCTCGGCAAGCTGAGCGAAGAAGAAATCAAAGACCGC 1200
BSNT_04392 88 TTTGAAAGCCTCGGCTTAAAGC----AAAATTGGCGGCACCTTGCCCTGC 133
|||....|.|||||||| | ||.|||||.|.||.|
BL00065___ytd 1201 TTTACTGGGCTCGGCTT----CCCTGAAGATTGGAGCCATC--------- 1237
BSNT_04392 134 TTGT----------GCTCCAAATTGACACACTGAATCATACACCTTATGA 173
||| .||.||||||||.|||.||||..|.|||.|.||.||
BL00065___ytd 1238 -TGTCGGTATTCACACTGCAAATTGATACATTGAAAGACACATCATACGA 1286
BSNT_04392 174 GAAAAAAGATATGGATCTGCTTTTGTTTGCCGTCAACAGCCTGATTGAGC 223
.|||||.|||.|.|||.|.||..|||||||..||||||||||..|.||.|
BL00065___ytd 1287 AAAAAAGGATCTTGATGTCCTGCTGTTTGCGATCAACAGCCTTGTCGAAC 1336
BSNT_04392 224 GCAGCATC----CCGACGGACAAACATCTTGCCCCCGCCGTGGTG----- 264
| ||| ||.|.|.|.||.|..||| |||||| |.||
BL00065___ytd 1337 G----ATCTGTGCCCAAGAATAAGCGCCTT----CCGCCG-GTTGTCATT 1377
BSNT_04392 265 GACAAACAGCAGGCAACGATTTTGATCAATCAAAGCGGGAC--------- 305
||.|||..||||.|.|..||..||.|.|||| || ||||
BL00065___ytd 1378 GATAAAACGCAGACCATCATCATGCTGAATC---GC-GGACAGCCGCTGG 1423
BSNT_04392 306 AAAGG----AGGAATTCATGGCTGAG------CTGAATGAGACTGCAAGG 345
||||| ||||| |.||.|| |.|.||.||.|...||||
BL00065___ytd 1424 AAAGGTTTCAGGAA-----GACTTAGAGCATACCGCATCAGCCATTAAGG 1468
BSNT_04392 346 AT--GATTCAGGAAAAAGCGGAAGCTGAGCTGCAGCTGTCTGTCAGCATC 393
|| .|||||.||| |||||...|.|||..|||||||||
BL00065___ytd 1469 ATAAAATTCATGAA------------GAGCTTGGGTTGTTCGTCAGCATC 1506
BSNT_04392 394 GGCGTCAGCCAGCCGTTTGA-------TGCGCTGACAAAG-GCGAAAACA 435
|||.||||||||||.||| | |||..||.||||| |||
BL00065___ytd 1507 GGCATCAGCCAGCCATTT-ACAAGTCTTGCAATGTCAAAGCGCG------ 1549
BSNT_04392 436 GCCTACGCT-----GAAGG--TTCGGAGGCGTTGAAATACCGGCTTAAA- 477
|.| ||||| || ||.||..|||.||||||.||.|||
BL00065___ytd 1550 ------GTTATTTGGAAGGGCTT--GAAGCACTGACATACCGTCTGAAAT 1591
BSNT_04392 478 GCGGAAAACAAGTCGATCATCTTTTACGAAGACCTTGACCAGAAAAAAAC 527
.|||||||||.| ||.|.||.||.||.|||.|||||||||..||.|||.|
BL00065___ytd 1592 CCGGAAAACACG-CGGTGATTTTCTATGAACACCTTGACCGCAACAAAGC 1640
BSNT_04392 528 CTTCAAAACCCATTTTCCAAAGCAGCTTCAGCATGAGCTGTTCGATGCCG 577
.||...||||||.|||||.||||||.||||..||||.|||||.||.|||.
BL00065___ytd 1641 GTTTTTAACCCAGTTTCCGAAGCAGATTCAAAATGAACTGTTTGAAGCCA 1690
BSNT_04392 578 TTAAA----GCA---GGAGACAAGGAGAAAGCGGATAAATGCCTGCACGC 620
||||| ||| |.|.|| ||||||...||...||.|||..
BL00065___ytd 1691 TTAAAACGTGCAACCGTAAAC-------AAGCGGCCGAACAGCTTCACCT 1733
BSNT_04392 621 GATT-TTGCAAG-CCATTTTCACCCAGAACACCAACCCGTATCAATTTCA 668
..|| ||| || |.||||...|..|.||||..||.|||.||||.|..||
BL00065___ytd 1734 TCTTCTTG--AGTCGATTTGTTCTGAAAACATGAATCCGCATCACTGCCA 1781
BSNT_04392 669 AATCGCCATCGCCCGTTTTTTGAACCATGTGATTGAGCTGATGCATGTGC 718
.||.||.||.||..|..|.||||||.|..|||||||..|.||||||.|||
BL00065___ytd 1782 GATTGCGATTGCAAGGCTGTTGAACAACTTGATTGAATTTATGCATTTGC 1831
BSNT_04392 719 TTGGGATCGA-ATTGTTTGAGCTTGAA-GAAAACAAAATGCTGTATGACC 766
|.||.||||| ||| |||||.| .||| |||||.|..||||||||.|||.
BL00065___ytd 1832 TCGGAATCGAGATT-TTTGAAC-CGAACGAAAATACGATGCTGTACGACG 1879
BSNT_04392 767 AAATTTTTGAGCTGAAAACGTTCGAGGATACCGAAAACTGGCTAAAAAAT 816
|..|.||||||||||..||..|||||||.|..||||.||||||.||....
BL00065___ytd 1880 ACGTCTTTGAGCTGACGACCATCGAGGAAATTGAAAGCTGGCTGAACGCG 1929
BSNT_04392 817 GAGTTTAT--------TGATCCGATGACAGACA----AAGTGAACGCCCG 854
.||.|||| |||| |||| |||..|| .||.|||
BL00065___ytd 1930 CAGATTATCGTTAAAATGAT-CGAT-ACACTCAGCATCAGAGAA------ 1971
BSNT_04392 855 CGCGGATGCCCAGTACAAAAATATTTCCGACAACATCATTCATATCATCC 904
||..|.||.||||||||.||.||.||.||.|||.|.|||||.||||
BL00065___ytd 1972 ----GAATCGCAATACAAAAACATCTCAGAAAAAATCGTCCATATTATCC 2017
BSNT_04392 905 ATCATGAGTTTGAATCCGAATTGACACTGGACGAA---ATCGCGCGCAGG 951
|.||.||.||.||..|.||.|||||.|| |||| |||||..|.|||
BL00065___ytd 2018 AGCAGGAATTCGACACGGACTTGACGCT---CGAATCGATCGCAGGAAGG 2064
BSNT_04392 952 CTGCATTACAACCCAAATTATTTAAGCAGCATTTTCAAAAAAGAAATGGG 1001
||.|||||||||||.|||||||||||||||||.||||..||.||||||..
BL00065___ytd 2065 CTTCATTACAACCCCAATTATTTAAGCAGCATCTTCAGGAAGGAAATGAA 2114
BSNT_04392 1002 TATTTCATTCAGCGAGTA--TGTC-TCAAGCTACCGACACCATATGGCGA 1048
.||.||.||||||||.|| |||| ||| |||.|.||.|||||.||||
BL00065___ytd 2115 AATATCGTTCAGCGAATACTTGTCATCA---TACAGGCATCATATCGCGA 2161
BSNT_04392 1049 AAAGCTGGCTTGCCGAAACAGAC-ATGGCGGTCAAGGACATTGCCGAAAA 1097
|||.||||||..|.||||| ||| |||.|.||.||.||.|||.|||||||
BL00065___ytd 2162 AAAACTGGCTGACGGAAAC-GACTATGTCCGTAAAAGAAATTTCCGAAAA 2210
BSNT_04392 1098 GCTGAAATATAAAAACTCGCAAAATTTTATCAGGTCTTTTAAAAAGCTGG 1147
.||||||||.|||||..||||.|||||.|||.|.||.|||||||||||||
BL00065___ytd 2211 ACTGAAATACAAAAATCCGCAGAATTTCATCCGTTCATTTAAAAAGCTGG 2260
BSNT_04392 1148 AGGGGATTACACCGGGAAACTACCGCCAGCAAAAAAGAAGCAT-----GT 1192
|.||.||.|||||.||.||.||||||.|||..||| ||.||| .|
BL00065___ytd 2261 AAGGAATCACACCCGGCAAATACCGCGAGCTGAAA--AACCATTCGGCAT 2308
BSNT_04392 1193 AA 1194
||
BL00065___ytd 2309 AA 2310
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