Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00868 and BL00064
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00868.1.5803.seq
# -bsequence dna-align/BL00064___ywqM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00868-BL00064___ywqM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00868-BL00064___ywqM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00868
# 2: BL00064___ywqM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 969
# Identity: 591/969 (61.0%)
# Similarity: 591/969 (61.0%)
# Gaps: 144/969 (14.9%)
# Score: 1606.5
#
#
#=======================================
BSNT_00868 1 ATGGAAATACGGCATCTAAAGACATTTATAACAATAGTGGAAAAGGGAGG 50
|||||.||.||.||..|.||.|||||||.||||||.|||||.|..||.||
BL00064___ywq 1 ATGGAGATCCGACACTTGAAAACATTTAAAACAATCGTGGATATCGGCGG 50
BSNT_00868 51 ATTTACAAAAGCAGCTGAATATTTAGGTTATGCCCAATCGACCATAACTT 100
.|||||....||.||.||.||||||||.|||||.||.||.||..|.||||
BL00064___ywq 51 TTTTACCCGTGCTGCCGATTATTTAGGATATGCACAGTCCACTGTGACTT 100
BSNT_00868 101 CACATATCAAAGATATTGAGCAAGAAATAGGAGGACCCTTATTTAATCGT 150
|.||..|..|||..||.||.||||||.||.||...||..|.||..|.||.
BL00064___ywq 101 CGCACGTTCAAGCAATCGAACAAGAATTAAGAAAGCCGCTGTTCTACCGG 150
BSNT_00868 151 TTTGGGAAGAAAATGCTGTTAACTGAAGTGGGTGAGTATTTGTTGCCATA 200
.|.|||||.||||||.||.|.||.||||.|||..||.|..|..|.||.||
BL00064___ywq 151 CTCGGGAAAAAAATGATGCTGACAGAAGCGGGAAAGCACCTTCTCCCTTA 200
BSNT_00868 201 TGCAAACGAAATGATCAGGATTTCTGAAAAAGTAAAACAAATACAATC-- 248
|||....||||||.||..|.|.|.||||||||..|..| |||.||
BL00064___ywq 201 TGCCGCAGAAATGGTCGAGCTGTATGAAAAAGCGAGGC----ACATTCCG 246
BSNT_00868 249 --AAACGA--TGAACCCATGGGGAATCTTG-TTATTGGTGCCCCGGAATC 293
|||||| .|.|.||.|.|||||.|||| |.||.||.|||.|||||||
BL00064___ywq 247 GAAAACGACCAGGAGCCGTCGGGAAACTTGATCATCGGCGCCTCGGAATC 296
BSNT_00868 294 TTTAACGGTTTACCGTTTACCTCCAATTATTCACGAATT--CAA--AAAG 339
|||||||||.|||.|..|.||..|.|||.|||||||||| ||| |||
BL00064___ywq 297 TTTAACGGTATACAGGCTGCCCGCCATTCTTCACGAATTTACAAGCAAA- 345
BSNT_00868 340 CTTTTTCCTAAAGTGAAAATTACTTTAAAATCATCGACATGCTGG----- 384
|.|||..|.||.|...|.||||||||.||.||.||.||||||
BL00064___ywq 346 ---TATCCGCAGGTCACGGTCACTTTAAAGTCTTCCACGTGCTGGCAGCT 392
BSNT_00868 385 -------GAATTAAAAGATGATCTCCGAAATGGGAAGGTGGATTTAGCGT 427
|||||.|||.|.| |||| || |.|||.|.||.|
BL00064___ywq 393 GAGAGACGAATTGAAACAGG------GAAA----AA--TCGATGTCGCTT 430
BSNT_00868 428 TTCTGTTGGAGTATGAAC---AAGAGGAAGCTGATTTATATATAGAAAAA 474
||||.|||||..|.||.| |||| ||.| ||..|..||.|.|||||.
BL00064___ywq 431 TTCTTTTGGACAACGACCGGAAAGA--AAAC-GACCTTCATGTTGAAAAG 477
BSNT_00868 475 CTAATAACTGAGCCAATGATATTGGTATTCCCTAAA-------CAGCATA 517
||..|.|.||||||.|||.|.||..|.||.||.||| |.|||..
BL00064___ywq 478 CTGGTCAATGAGCCGATGGTGTTCATCTTTCCCAAAGAACACCCGGCAGG 527
BSNT_00868 518 AGTTGCAAAATACTCCATTTGATGATTTTTATTTTTCA-TCTGATGAAGT 566
| |||||..||| ||||||| |||.|.||||.| .|..|||||..
BL00064___ywq 528 A----CAAAAAGCTC---TTGATGA-TTTGACTTTTAACGCAAATGAAAC 569
BSNT_00868 567 GATTTTATATACAGAACATGGGTGCAGCTATCGTACTTACTTTGAAGAGT 616
|.||||||||||.||.||.||.||||||||.|||..||..|||||.||.|
BL00064___ywq 570 GTTTTTATATACCGAGCACGGCTGCAGCTACCGTGATTTTTTTGAGGAAT 619
BSNT_00868 617 ATATGAAACACCAA---GGACTGGTTTCGGAGAATACCTTTGAATTTTGG 663
||.| ||..||| |||.|..||.|.||..||||..|.||.||||||
BL00064___ywq 620 ATTT---ACGTCAAAGGGGAGTCATTGCCGACCATACGATGGAGTTTTGG 666
BSNT_00868 664 AGTGTTGAGGCAATTAAGCAGTGCGTTATGTGCGGTTTAGGAAT-TTCGT 712
|||||.||.||.|||||.||.|||||.|||||||||||.||..| |.|.|
BL00064___ywq 667 AGTGTCGAAGCGATTAAACAATGCGTAATGTGCGGTTTGGGCGTCTCCCT 716
BSNT_00868 713 TATTACCGTTGATCACTGTACAAAAAGAG--TTGA-----AAGAAAACAA 755
|.|| ||.|||||||| ||.|.| .||| |||||
BL00064___ywq 717 TCTT-CCTTTGATCAC-------AACGCGCACTGATATCGAAGAA----- 753
BSNT_00868 756 ATTAAGTGGATTGATT-ATGGATGAAACACG----------------TAT 788
|||..|.|| |.|| |||| |.|
BL00064___ywq 754 -------GGAAAGCTTCAGGG------CACGCTGGTCCGCGACGCCCTGT 790
BSNT_00868 789 TAT-AACGCAGGTGGCATATCATAAAAAAAGATGGAAT--TCCTTAGCGA 835
|.| .||.||..|||..|||||||||||.|.||||..| |||| ||.|
BL00064___ywq 791 TTTCCACTCAAATGGTTTATCATAAAAACAAATGGCTTTCTCCT--GCTA 838
BSNT_00868 836 TGGCTGAATTTATAAATATAGT----AAAAAAACATGCGGAATTATGGAA 881
||||.|..||||...||||.|| |..||..||.| |..||||.|
BL00064___ywq 839 TGGCGGCTTTTACGGATATCGTCCGCAGGAAGGCAAG----AGAATGGGA 884
BSNT_00868 882 AAGAACTCAGACTTTATAG 900
| |||||.|.|
BL00064___ywq 885 A------CAGACATAA--- 894
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