Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04440 and BL00062
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04440___ytqA.1.5803.seq
# -bsequence dna-align/BL00062___ytqA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04440___ytqA-BL00062___ytqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04440___ytqA-BL00062___ytqA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04440___ytqA
# 2: BL00062___ytqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity: 764/990 (77.2%)
# Similarity: 764/990 (77.2%)
# Gaps: 42/990 ( 4.2%)
# Score: 2882.5
#
#
#=======================================
BSNT_04440___ 1 GTG-ATGCAGAACAATCCTTTTCCTTATTCAAATACGGAAAAACGCTATC 49
.|| || ||||||||.||||||||.|||.|.||.|..||||||||.||||
BL00062___ytq 1 TTGCAT-CAGAACAACCCTTTTCCATATACGAACAGTGAAAAACGATATC 49
BSNT_04440___ 50 ATACATTGAATTATCATCTCAGAGAACATTTCGGCCATAAGGTGTTTAAA 99
||||||.||||||||||.|.|||.|.||||||||.|||||.|||||||||
BL00062___ytq 50 ATACATGGAATTATCATTTAAGAAATCATTTCGGTCATAAAGTGTTTAAA 99
BSNT_04440___ 100 GTGGCGCTTGACGGCGGTTTTGACTGTCCAAATCGGGATGGCACCGTAGC 149
||.||.||||||||.||.||||||||.||.||.||.||.||.||.||.||
BL00062___ytq 100 GTCGCCCTTGACGGAGGCTTTGACTGCCCGAACCGCGACGGTACGGTCGC 149
BSNT_04440___ 150 CCACGGAGGCTGTACGTTTTGCAGCGCAGCAGGCTCCGGAGATTTTGCTG 199
.|||||.||.||.||.|||||||||||.|||||...||||||.|||||.|
BL00062___ytq 150 ACACGGCGGATGCACATTTTGCAGCGCCGCAGGGAGCGGAGACTTTGCGG 199
BSNT_04440___ 200 GAAACCGGACCGATGATTTAATTACGCAAT---------TCCACGACATC 240
|||||||..||||.|||.|.|||||.|||| |.|.|||||
BL00062___ytq 200 GAAACCGCGCCGACGATCTGATTACCCAATTTAATGAAGTGCGCGACA-- 247
BSNT_04440___ 241 AAAAACCGCATGCACGAAAAATGGAAGGACGGCAAGTACATCGCTTATTT 290
|.|||||.|||||||||||.||||||||.|||||.||.||.||
BL00062___ytq 248 -------GAATGCATGAAAAATGGAAAGACGGCAAATACATGGCGTACTT 290
BSNT_04440___ 291 TCAGGCTTTCACAAACACTCACGC-CCCGGTTGAG-GTGCTTCGTGAGAA 338
|||.||.||.||.||.||.||||| |||| |.|| ||.|||||.||.||
BL00062___ytq 291 TCAAGCATTTACGAATACGCACGCTCCCG--TCAGCGTTCTTCGCGAAAA 338
BSNT_04440___ 339 ATTCGAATCCGTCCTCG--CTTTAGATGATGTGGTCGGCATTTCGATCGC 386
||.|||..||||||||| ||| ||.|..||.||||||.||||.|||||
BL00062___ytq 339 ATACGAGACCGTCCTCGGCCTT--GACGGCGTAGTCGGCCTTTCAATCGC 386
BSNT_04440___ 387 CACACGCCCGGACTGTCTGCCTGATGATGTCGTTGATTA-CTTGGCAGAG 435
.||.||.|||||.|||||.|||||.|||||.||.||.|| ||| ||.|||
BL00062___ytq 387 TACCCGGCCGGATTGTCTACCTGACGATGTTGTCGAATATCTT-GCCGAG 435
BSNT_04440___ 436 CTGAATGAACGCACCTATTTGTGGGTGGAGCTTGGGCTTCAAACAGTTCA 485
||.|||||||||||.||..|.|||||||||||.||.|||||.||.|||||
BL00062___ytq 436 CTTAATGAACGCACATACCTCTGGGTGGAGCTCGGCCTTCAGACCGTTCA 485
BSNT_04440___ 486 TGAACGGACTGCACTTCTGATCAACCGCGCACATGATTTTAACTGCTATG 535
|||||||||.||...|.|||||||||||||.||||||||..|||||||.|
BL00062___ytq 486 TGAACGGACGGCTGATTTGATCAACCGCGCCCATGATTTCGACTGCTACG 535
BSNT_04440___ 536 TGGAAGGCGTCAATAAATTAAGAAAACACGGCATACGTGTCTGCTCGCAT 585
||||||||||.||.||..|.||.|||||||||||.||.||||||||.||.
BL00062___ytq 536 TGGAAGGCGTGAACAAGCTGAGGAAACACGGCATCCGGGTCTGCTCCCAC 585
BSNT_04440___ 586 ATTATCAATGGGCTGCCTTTGGAAGACCGGGACATGATGATGGAAACGGC 635
||.||.||.||.||||||.|.||||||||.|.|||||||||||||||.||
BL00062___ytq 586 ATCATTAACGGACTGCCTCTCGAAGACCGCGGCATGATGATGGAAACCGC 635
BSNT_04440___ 636 AAAGGCCGTCGCAGATTTGGATGTCCAGGGCATTAAAATCCATCTGCTTC 685
|||.||||||||.||||||||.||.|||||.|||||||||||||||||.|
BL00062___ytq 636 AAAAGCCGTCGCCGATTTGGACGTGCAGGGGATTAAAATCCATCTGCTCC 685
BSNT_04440___ 686 ACCTACTGAAAGGCACGCCGATGGTCAAACAATATGAAAAGGGCAAGCTG 735
||||..|.|||||.||.||.|||||.||.||.||||||||.||.||..|
BL00062___ytq 686 ACCTGTTAAAAGGGACACCAATGGTGAAGCAGTATGAAAAAGGAAAATT- 734
BSNT_04440___ 736 GAA--TTTCTTTCTCAAGATGATTATGTGCAGCTCGTCTGCGATCAGCTT 783
|| ||.||||||||||||||.|||||.|||||.||.||||||||||||
BL00062___ytq 735 -AACGTTCCTTTCTCAAGATGAATATGTCCAGCTTGTTTGCGATCAGCTT 783
BSNT_04440___ 784 GAGATCATTCCGCCTGAAATGATCGTCCACCGCATTACAGGTGACGGACC 833
||.||..|||||||.|||||||||.|.|||||.|||||.|||||||||||
BL00062___ytq 784 GAAATTCTTCCGCCGGAAATGATCATTCACCGGATTACGGGTGACGGACC 833
BSNT_04440___ 834 GATTGAGTTGATGATCGGGCCAATGTGGAGCGTCAACAAATGGGAAGTGC 883
|||.||.||||||.||||.||.||||||||||||||.||||||||||| |
BL00062___ytq 834 GATCGAATTGATGGTCGGACCGATGTGGAGCGTCAATAAATGGGAAGT-C 882
BSNT_04440___ 884 TT-GGCGCCATTAATAAAGAGCTAGAAAATCGAGGCAGCTATCA-AGGAA 931
|| ..||||||.||....||..|.||||..||.||||||.|||| .||||
BL00062___ytq 883 TTAAACGCCATCAACGGGGAATTGGAAAGGCGCGGCAGCCATCAGGGGAA 932
BSNT_04440___ 932 AGTTCTTTCAAC--GGCTTGAGGAGGAATCAGCGCTATGA 969
| |..|||||| |||...||.|||.|| .||...||||
BL00062___ytq 933 A--TGGTTCAACAAGGCGAAAGAAGGCAT-GGCCACATGA 969
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