Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04343 and BL00049
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_04343.1.5803.seq
# -bsequence dna-align/BL00049___ytpT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04343-BL00049___ytpT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04343-BL00049___ytpT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04343
# 2: BL00049___ytpT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3223
# Identity: 1928/3223 (59.8%)
# Similarity: 1928/3223 (59.8%)
# Gaps: 803/3223 (24.9%)
# Score: 5760.0
#
#
#=======================================
BSNT_04343 1 ATGAGTTGGCTTCATAAATTTTTTGATTTGTTTTTAGGCGAAAGCGAAGA 50
|||||.|||.||.|||||.|.||.....||||||||||||| .||.||
BL00049___ytp 1 ATGAGCTGGTTTAATAAAATGTTCAGCCTGTTTTTAGGCGA---TGATGA 47
BSNT_04343 51 GGATGCTGAACGGGAGACAAAACCCGCTCAAATTCCGCAGCA-ACAAGAA 99
.|||..|||| |.|||||| ||| ||| || |.|.|||
BL00049___ytp 48 AGATAATGAA----AAACAAAA-------AAA----GCA-CATAGACGAA 81
BSNT_04343 100 GTACA-------TCATCCTGA-AGGACAATTAAAAAGATTGGAAGAT-CC 140
.|..| |||||.|.| ||||| .||| |||| ||
BL00049___ytp 82 TTTGAGGCGGATTCATCTTCAGAGGAC------GAAG------AGATGCC 119
BSNT_04343 141 TAAAATA----------------TATTATGAATATCCAAAAGGCAAATTC 174
..||||| || |||||||||||||||||.||||||
BL00049___ytp 120 GCAAATAACCGACGCAAAAGTCGTA-TATGAATATCCAAAAGGGAAATTC 168
BSNT_04343 175 CGTTTTCCAGTCGTGCCTGACGGATACA------------AAAATCATGA 212
||.|||||.||..|.|||||...|.||| ||||..|.||
BL00049___ytp 169 CGCTTTCCGGTTATACCTGATCAAAACACGCGGCCGCGGGAAAAGGACGA 218
BSNT_04343 213 C--CTGAG----AAGG---CGCCGCACACCATCGGACGAACCGA-AATCC 252
| |.|.| |||| |||||| |.|.|||.|||| |.||.
BL00049___ytp 219 CAGCCGCGAACAAAGGACCCGCCGC-------CCGGCGAGCCGATATTCA 261
BSNT_04343 253 GCGCCTCGTCCAAGTGCTGCACCTTACAGAGAGCGTCCCAGAAATGAAGA 302
||..|||..|| ||.| |||.|.|||
BL00049___ytp 262 GCTTCTCAGCC-----------------GAAA----CCCGGCAAT----- 285
BSNT_04343 303 AGAGCAGCATA-CA-TATCAAGCAGCAGAGC--CGGCGAAGAAACCGTTT 348
.|||| || |||.||| || |.||| |||||||.|||||.|||
BL00049___ytp 286 ------TCATATCATTATGAAG-AG-AAAGCGGCGGCGAAAAAACCTTTT 327
BSNT_04343 349 AAACCGACAAATATCCCTTCGCCTATCTATGGATTCAATCAAAAACCATC 398
|..|||.|....|||||.||.||..|.||.||.|| ||
BL00049___ytp 328 AGGCCGTCCGTCATCCCATCACCGGTTTACGGCTT-------------TC 364
BSNT_04343 399 TGTTAAAAAGGATGTGCCGAAAA-AGCCTTCTGAAACATTGAACGAA-CC 446
|||.||.||||| |||| || ||
BL00049___ytp 365 -----------ATGAGCAGAAAAGAGCC-----------------AAGCC 386
BSNT_04343 447 GGATAA--------ATCG-GTAAAAGA-------GAAG---GTAACACTG 477
|||.|| |||| |.||||.| |||| ||..||| |
BL00049___ytp 387 GGAAAATCATACATATCGTGCAAAAAAACAAACTGAAGCGCGTGTCAC-G 435
BSNT_04343 478 CTGT----CAGAAGAGATCGAACGTGAACGCGGCTATCCTGCTTCAGACA 523
|||| | |||||.||.||| ||.|.| ||||
BL00049___ytp 436 CTGTTTAAC-GAAGAAATTGAA----AAAGAG------------CAGA-- 466
BSNT_04343 524 CACCGGCGCATTC--CAAAAAAGAA--AGTCCTTTCTTCCCGGATACCCA 569
|.|| ||.||.|.|| || |||| |||
BL00049___ytp 467 ---------AGTCTGCAGAACATAAGCAG----------CCGG-TAC--- 493
BSNT_04343 570 ATTTGAAAAACAGCCTTCTG-GCGTTTTAAACAGAAAGGATATGGAGCAT 618
||.||..|| ||||.| || ||||.||||.|
BL00049___ytp 494 ----GAGAAGAAG-CTTCCGTGC-----AAACTGAAAAG----------- 522
BSNT_04343 619 GATGAGGCGCTGGCGAAACGGCCAGCCGAGCCGTCAGGT-AACAAAGTGC 667
|||| ||||||.|.| |.||||
BL00049___ytp 523 ----------------AACG---------GCCGTCCGCTGATCAAA---- 543
BSNT_04343 668 CATTTGAGTCAGGCGTTCAACAGCCGGAAAAAGAGGAGCCTTTCTTCCCA 717
|| |.|.|||||.| |.|||...||.|..
BL00049___ytp 544 ----------AG-----CGAGAGCCGCA--------ATCCTGCATTGCGC 570
BSNT_04343 718 GCTGAACAAGCCGAAGA------GCAAACACCGCCTGAGATGCTCACAGA 761
||.| ||..|||||| |||..||.|..|.|||||.|..|.|||
BL00049___ytp 571 GCCG---AATTCGAAGATGTCCCGCAGGCATCCACGGAGATTCCAAAAGA 617
BSNT_04343 762 TACGGCGGCTGAAGGGCTTTCAGA--CAGTGA-AGTAGGCCGCG------ 802
.||| |||...|.|.|||| .|.||| ||.||| ||||
BL00049___ytp 618 AACG------GAAATCCGTCCAGAGCGAATGACAGAAGG-CGCGGGACTC 660
BSNT_04343 803 --------AAGAGC-CTGCAACGGCTGAGGAA---GAACAAAGGGAGCAG 840
||.||| ||| |||| |.||| ||||.|| .||.||
BL00049___ytp 661 GCAGAGGAAAAAGCGCTG---CGGC--ATGAATCCGAACGAA--CAGAAG 703
BSNT_04343 841 CA-----GCCAG-------------AGAAACTTGAAGAGCCTGTTTTCTC 872
|| |.||| |||||| .|||| ||
BL00049___ytp 704 CACCTGTGTCAGTGCATATTCCGGAAGAAAC-GGAAG-----------TC 741
BSNT_04343 873 CGCTGAACTTGATGAAGAGCAAACAGCTCCTGAATCTCAGACAGA----- 917
|| |..||||| |||| ||||||
BL00049___ytp 742 CG----------TCCAGAGC-----------GAAT----GACAGAAGGCG 766
BSNT_04343 918 -GGCAGTATCTGAGGATGAAAAAGC------AAAAG-AGCCGT----CAG 955
||.|.|..|.||| |||||||| |||.| |||.|| .||
BL00049___ytp 767 CGGGACTCGCAGAG---GAAAAAGCGCTGCGAAATGAAGCTGTAGAAGAG 813
BSNT_04343 956 ACAGCC-CAGTAT-ACAATCACCATGAAAACGCGGCAGAAGGTGCTGAGT 1003
||.||| |.|.|| |||| |.|||.| |||..||||..|| |.|
BL00049___ytp 814 ACCGCCTCCGCATCACAA--AACATAA-----CGGAGGAAGACGC--AAT 854
BSNT_04343 1004 CCCCGTTCGTTCAAGAA---GAACAAATGGACA-----TTCG-------T 1038
|||||.| |..|||..| ||||||||.||.| ||.| |
BL00049___ytp 855 CCCCGCT-GAGCAAACACCGGAACAAATCGAAAAGCTTTTGGATAAGATT 903
BSNT_04343 1039 CAG---------GAAGAGCCTTTAT-TTACTGATCATGAGTATTCATCAG 1078
.|| |||||| || .||||| .|||
BL00049___ytp 904 GAGGAAACCGGAGAAGAG-----ATGGTACTG--------------GCAG 934
BSNT_04343 1079 AGG-CTCTGGCTCAAGC---------AGAA-------------ACTGT-- 1103
||| | ||..|||| |||| ||.||
BL00049___ytp 935 AGGAC----GCAGAAGCCGCCACGGAAGAACAAGGGAAGACTTACGGTTC 980
BSNT_04343 1104 -GGCAAAA--------------GAA---TCA------GAAGAGCC----- 1124
||||||| ||| ||| ||||||||
BL00049___ytp 981 GGGCAAAACGCATCCCGACCCGGAAGCTTCAGTTCCGGAAGAGCCGCACA 1030
BSNT_04343 1125 --CAT--------------AATAA------------AT-AATC------- 1138
||| ||||| || ||||
BL00049___ytp 1031 CTCATGGCCGCGCCTCTGAAATAACCGTCCAGAGCGATGAATCTTCCCAT 1080
BSNT_04343 1139 -------ATTATGACATCCTGGGAGAGGCTC---AGGAAAC-----GAAG 1173
|||...|||.||.||..||.|||| |.||||| ||||
BL00049___ytp 1081 AGGACAGATTCAAACACCCCGGCTGACGCTCTTGAAGAAACAAGCGGAAG 1130
BSNT_04343 1174 ATAGATGTTCAGCCAGACAGCCATACAGAGCTTGAGAAAACTGAACACAT 1223
|.|||||||.| |||.||||.||
BL00049___ytp 1131 ---------CCGCCAGACTG---------GCTGGAGACAA---------- 1152
BSNT_04343 1224 GGAGCAGGGTTCCAAATCGTCTACTGCACCTCTTGAAAATCGGCAGGG-- 1271
||||||| ||||...|.|||| |.||| ||||||.|
BL00049___ytp 1153 -GAGCAGG---------CGTCATGTTCACC----GGAAA-CGGCAGCGCC 1187
BSNT_04343 1272 AATTCGCGCAGACAAACCTCGCGAAGCTTCAGCAGAGCCGAAAAAAAGGC 1321
|| ||||.|...|||| |||| ||||| || ||.|.|| |
BL00049___ytp 1188 AA---GCGCGGGTGAACC---CGAA-----AGCAG-GC--AAGAGAA--C 1221
BSNT_04343 1322 CTGGTGCAC----AGGAGAAA--AGGA----CCGAACA------------ 1349
|.||.| || ||||.||| |||| |||.| |
BL00049___ytp 1222 CGGGAG-ACTACAAGGATAAACGAGGATCGGCCGGA-AGCTCCGCGGAAG 1269
BSNT_04343 1350 ----AAGC-GCATCTTCTC--------AAAAAGGGCCATCCGTTCCTTTT 1386
|||| |.|.|..||| ||.||.||| ||.|||||.|||
BL00049___ytp 1270 CGGGAAGCAGGAGCCGCTCCGGGATCGAAGAAAGGC--TCTGTTCCGTTT 1317
BSNT_04343 1387 AATGTGATGATG-----CTGAAAAGAGATACGCATAAACAGCAAAAAGCA 1431
|||||.|||||| || .||||| |.|||||||.|
BL00049___ytp 1318 AATGTCATGATGTTTGCCT-----CAGATA---------AACAAAAAGAA 1353
BSNT_04343 1432 GAGGAGCGCCGC---GGCAGCTATGTATTTCCGAATGTTGCACTGCTTGA 1478
.| ||||||.| || |||...||.||||||.|..|..|||||||
BL00049___ytp 1354 AA--AGCGCCTCAAGGG----TATCAGTTCCCGAATATGTCTTTGCTTGA 1397
BSNT_04343 1479 TGTCCCGCCAGCGCAGGTTCAAGATGAT----ACTGCGTGGATCGAAGAA 1524
|||.|||||.|||||....||.|||||| || |||||..|.||.
BL00049___ytp 1398 TGTGCCGCCGGCGCAAAAGCAGGATGATCAGGAC----TGGATACACGAG 1443
BSNT_04343 1525 CAGCGTCAGCTTCTTGATTTGAC-CTTGAAAAACTTCAATGTCCGCGCCA 1573
|||||..||||..|.||..|.|| |||| |.|||||||||||....||.|
BL00049___ytp 1444 CAGCGGGAGCTGTTGGACGTCACGCTTG-AGAACTTCAATGTTAAAGCAA 1492
BSNT_04343 1574 ATGTGGTCCATGTAACCCAGGGTCCGTCTGTCACGAGATTTGAAGTGCAT 1623
||||.||.|||||.|||||.||.||.|||||.||.|||||||||||.|||
BL00049___ytp 1493 ATGTCGTTCATGTCACCCAAGGGCCTTCTGTGACAAGATTTGAAGTTCAT 1542
BSNT_04343 1624 CCTGAACCGGGTGTAAAGGTGAATAAAATCACCAACTTGTCCGATGATAT 1673
||||||||.||.||.||.||.||.|||||.||.||..||||.||||||||
BL00049___ytp 1543 CCTGAACCCGGAGTGAAAGTCAACAAAATTACAAATCTGTCAGATGATAT 1592
BSNT_04343 1674 TAAACTCAGTCTCTCAGCGAGAGATATTCGGATTGAAGCGCCGATTCCGG 1723
|||||||||.||.|||||||.||||||||||||.||.||.|||||.||||
BL00049___ytp 1593 TAAACTCAGCCTGTCAGCGAAAGATATTCGGATCGAGGCACCGATCCCGG 1642
BSNT_04343 1724 GGAAAAACACGATCGGAATTGAAGTGCCGAA-CCGCACGAGCAAGGTGGT 1772
|.|||||.||||||||||||||||||||||| |.|||| |||||..||||
BL00049___ytp 1643 GAAAAAATACGATCGGAATTGAAGTGCCGAATCTGCAC-AGCAAAATGGT 1691
BSNT_04343 1773 TGATTTGCGCCAAATGATTCGCAGCTCAGCTTTCAGGAC-AAGCAAGTCA 1821
|.||||.|||.|||||||..|.||.||.|..||.||.|| ||.| .|||.
BL00049___ytp 1692 TTATTTACGCGAAATGATCAGAAGTTCGGAATTTAGAACGAATC-CGTCT 1740
BSNT_04343 1822 CCGCTCACAGCTGCGCTGGGATTAGATATTTCAGGAAATCCTGTTGTTAT 1871
||.||.|||||.||.||.|||.|.||.||.||.|||||.||.||.||
BL00049___ytp 1741 CCTCTGACAGCAGCTCTCGGACTCGACATATCCGGAAAGCCCGTCGT--- 1787
BSNT_04343 1872 CGACT----TGAAGAAAATGCCGCATGGCTTGATTGCCGGCGCTACAGGC 1917
|.|| ||||.||||||||.||.||.|||||||||||.|||||.||.
BL00049___ytp 1788 -GGCTGATCTGAAAAAAATGCCCCACGGTTTGATTGCCGGGGCTACGGGA 1836
BSNT_04343 1918 TCCGGAAAAAGCGTATGCATCAATACAATATTAGTCAGCCTGCTTTATAA 1967
||.||||||||||||||||||||.||.||.|||||.||||||||.|.|||
BL00049___ytp 1837 TCAGGAAAAAGCGTATGCATCAACACGATCTTAGTAAGCCTGCTGTTTAA 1886
BSNT_04343 1968 AGCTGAC-CCGAGTGAGGTAAAGGTGCTGCTGATTGATCCGAAAATGGTA 2016
||| |.| ||.||.||.||||||.|.|||||.||.|||||.||.|||||.
BL00049___ytp 1887 AGC-GTCGCCTAGGGATGTAAAGCTTCTGCTTATCGATCCTAAGATGGTG 1935
BSNT_04343 2017 GAGCTGGCCCCTTACAATAAAATTCCTCACCTCGTCAGCCCAGTCATTAC 2066
|||||.||.||.||.|||||.||||||||.||||||||.||.|||||.||
BL00049___ytp 1936 GAGCTTGCTCCGTATAATAATATTCCTCATCTCGTCAGTCCTGTCATCAC 1985
BSNT_04343 2067 TGATGCTAAAGCGGCTACAGCTGCTTTGAAATGGGTCGTTGAGGAAATGG 2116
.|||||.||||||||.||.||.||.||.||||||||.||.||||||||||
BL00049___ytp 1986 AGATGCAAAAGCGGCAACCGCCGCATTAAAATGGGTTGTCGAGGAAATGG 2035
BSNT_04343 2117 AGCGCCGCTATGAGCTTTTTGCCCATTCCGGTGTCCGCGACATTGACCGC 2166
|.||.||||||||..|.|||||.|||||||||||.||.||.|||||.||.
BL00049___ytp 2036 AACGGCGCTATGAATTATTTGCTCATTCCGGTGTTCGGGAAATTGAGCGT 2085
BSNT_04343 2167 TTTAATCAATTAA---CCGCTGAACACCAAATGGGTGAAAAGCTGCCATA 2213
||||||.|| || ||| .|||||..|.|||||||||||.||.||.||
BL00049___ytp 2086 TTTAATGAA--AAAGTCCG-GGAACAGAACATGGGTGAAAAACTTCCTTA 2132
BSNT_04343 2214 TTTAGTTGTCATTATTGATGAGCTTGCAGATTTGATGATGGTGGCTCCAA 2263
|.|.||||||.|.||||||||.|||||.|||||.||||||||.|||||.|
BL00049___ytp 2133 TCTTGTTGTCGTGATTGATGAACTTGCCGATTTAATGATGGTCGCTCCGA 2182
BSNT_04343 2264 ACGATGTGGAAGAAAGCAT-TGCGCGGATCGCCCAAAAAGCCAGAGCGTG 2312
|.||.||||||||.||||| ||| ||.|||||.||||||||.||||||||
BL00049___ytp 2183 ATGAAGTGGAAGAGAGCATCTGC-CGAATCGCACAAAAAGCAAGAGCGTG 2231
BSNT_04343 2313 CGGTATCCATCTTCTCGTTGCAACTCAGCGTCCGTCAGTCGATGTCATTA 2362
|||.|||||||||||..||||.||.|||||.||.|||||.||||||||||
BL00049___ytp 2232 CGGCATCCATCTTCTGATTGCGACGCAGCGGCCTTCAGTTGATGTCATTA 2281
BSNT_04343 2363 CAGGTCTGATTAAGGCGAATATCCCAACGAGAATCGCCTTTTCTGTCTCA 2412
|.||..|||||||.||.|||||||||||.|||||.||.||||||||.|||
BL00049___ytp 2282 CCGGCTTGATTAAAGCCAATATCCCAACAAGAATAGCGTTTTCTGTTTCA 2331
BSNT_04343 2413 AGCCAGGTTGATTCCCGAACAATTATTGACATAGCCGGTGCAGAAAAGCT 2462
|||...||.|||||..||||||||||.||.||.||.||.||.||||||||
BL00049___ytp 2332 AGCGCTGTCGATTCAAGAACAATTATCGATATGGCGGGAGCTGAAAAGCT 2381
BSNT_04343 2463 TCTCGGAAAAGGGGATATGCTCTTTTTGGAAAACGGATCGGGAAAACCTG 2512
|||.|||||||||||||||||.||.|||||.||.||.||.||.|||||.|
BL00049___ytp 2382 TCTTGGAAAAGGGGATATGCTGTTCTTGGAGAATGGTTCAGGCAAACCGG 2431
BSNT_04343 2513 TCCGTCTGCAAGGTAACTTTGTGTCAGACCGGGAAATCGACCGCGTCGTT 2562
||||.||||||||.|||||||||||.||||||||.||.||.||.||||||
BL00049___ytp 2432 TCCGCCTGCAAGGCAACTTTGTGTCCGACCGGGAGATTGATCGTGTCGTT 2481
BSNT_04343 2563 TCTCACGTCAGAAGCCAAATGCCGCCGACCTATTTATTTGAACAAGAAGA 2612
||.||.||||||.|.||...|..|||||.|||||||||||||||.|||.|
BL00049___ytp 2482 TCACATGTCAGACGGCAGCAGGAGCCGAACTATTTATTTGAACAGGAACA 2531
BSNT_04343 2613 GCTCGTAAGACAA---------GGATCTGCCCTGAAAGAAGAGGACGAAC 2653
..|.||.|||||| ||||.||.|| |.||.||||
BL00049___ytp 2532 ATTGGTCAGACAAAATCCGGCCGGATTTGACC---------ACGATGAAC 2572
BSNT_04343 2654 TGTTTTACGAAGCGTGTGAGTTTGTTGTAGAGCAAAACAGTGCGAGCACT 2703
|||||...||||||||.||.||||..||.||.||||||||.||.||||||
BL00049___ytp 2573 TGTTTCTTGAAGCGTGCGAATTTGCCGTGGAACAAAACAGCGCCAGCACT 2622
BSNT_04343 2704 TCAAGCCTGCAAAGAAGATTCAGAATCGGTTACAATCGTGCGGCAAGGCT 2753
|||||||||||..|..|.|||.|.|||||.||.||..|.||.||.||..|
BL00049___ytp 2623 TCAAGCCTGCAGCGGCGCTTCCGCATCGGCTATAACAGAGCTGCCAGATT 2672
BSNT_04343 2754 GATCGACATGATGGAAGCGGAAGGCATGATCTCTGAGGCAAAAGGAAGCA 2803
.|||||.|||||||||..||||||||||||.|||||.||.|||||.||||
BL00049___ytp 2673 AATCGATATGATGGAAAGGGAAGGCATGATTTCTGAAGCGAAAGGGAGCA 2722
BSNT_04343 2804 AGCCTCGAGAGGTGCTGATCACAGCAAG--TGAT---------TTAATAA 2842
||||..||||.||.|||||.||| ||| |||| ||||||.
BL00049___ytp 2723 AGCCGAGAGAAGTCCTGATTACA--AAGGCTGATCTGGAACAGTTAATAG 2770
BSNT_04343 2843 A---------------CGAATAA 2850
| ||..|||
BL00049___ytp 2771 AAAGTAGTTCACTTTTCGGCTAA 2793
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