Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04344 and BL00048
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_04344___ytpR.1.5803.seq
# -bsequence dna-align/BL00048___ytpR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04344___ytpR-BL00048___ytpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04344___ytpR-BL00048___ytpR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04344___ytpR
# 2: BL00048___ytpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity: 454/615 (73.8%)
# Similarity: 454/615 (73.8%)
# Gaps: 18/615 ( 2.9%)
# Score: 1604.0
#
#
#=======================================
BSNT_04344___ 1 ATGAACGCTTTTTATAATAAAGAAGGTGTGGGAGACACGCTCCTGATCTC 50
||||||||.|||||||||..||||||.||.||.||.|||||.||.|||||
BL00048___ytp 1 ATGAACGCATTTTATAATCCAGAAGGCGTAGGCGATACGCTGCTCATCTC 50
BSNT_04344___ 51 TCTTCAA-GATGTGACACGCGAACAATTAGGCTATGAAAAACACGGCGAC 99
.||.|| |||.|..||||.|||.|..|.|..|.|||.....||||.|||
BL00048___ytp 51 -ATTGAACGATATTCCACGTGAAGAGATCGCTTTTGAGCGGTACGGAGAC 99
BSNT_04344___ 100 GTCGTCAAAATTTTCAATAACGAAACAAAAGAAACAACGGGCTTCAACAT 149
|||||.||||||||..||||.||.|||||.||||||.|.||||..|||||
BL00048___ytp 100 GTCGTGAAAATTTTTCATAAAGACACAAAGGAAACAGCAGGCTATAACAT 149
BSNT_04344___ 150 TTTCAACGCGTCTTCTTACTTGACCATTGATGAAAACGGCCCTGTTGCGC 199
|||.||.||.||.||.||.||||.||||||.||||.|||..||.||||||
BL00048___ytp 150 TTTTAATGCCTCCTCATATTTGAGCATTGAGGAAAGCGGAGCTATTGCGC 199
BSNT_04344___ 200 TCTCAGAAACATTCGTGCAAGATGTGAATGAGATTTTAAACAGAAACGGC 249
|.||.|||.|.||.||.||.|||||||||||.|||.|...|.|.|||||.
BL00048___ytp 200 TTTCCGAATCCTTTGTCCAGGATGTGAATGAAATTCTGGTCCGCAACGGT 249
BSNT_04344___ 250 GTTGAAGAAACATTAG----TCGTTGATTTATCTCCGAAGTTTGTTGTGG 295
.| ||||.|..|| .|||.||..|.||||||||||||||.||.|
BL00048___ytp 250 TT----GAAAGACGAGCTGACCGTCGACCTTTCTCCGAAGTTTGTGGTCG 295
BSNT_04344___ 296 GGTATGTAGAATCAAAAGAAAAACATCCGAATGCGGATAAATTAAGCGTA 345
|.|||||.|||..|||||||||.|||||||||||.|||||||||||.||.
BL00048___ytp 296 GATATGTTGAAGAAAAAGAAAAGCATCCGAATGCCGATAAATTAAGTGTT 345
BSNT_04344___ 346 TGTAAAGTCAACGTAGGAGA-AGAAACGCTTCAGATCGTCTGCGGCGCGC 394
||.|||||.||.||||| || .||.|||||.||.|||||||||||.||.|
BL00048___ytp 346 TGCAAAGTGAATGTAGG-GAGCGAGACGCTGCAAATCGTCTGCGGAGCTC 394
BSNT_04344___ 395 CTAACGTTGA--CCAAGGCCAAAAAGTTGTCGTTGCCAAAGTCGGTGCTG 442
|.||.||||| || |||||||||||.|||||||||||||||||.||.|
BL00048___ytp 395 CCAATGTTGAAGCC--GGCCAAAAAGTCGTCGTTGCCAAAGTCGGCGCCG 442
BSNT_04344___ 443 TGATGCCTAGCGGACTTGTCATTAAGGATGCAGAGCTTCGCGGCGTTCCG 492
|||||||||||||..|..|||||||.|||||.||.||||||||.||..||
BL00048___ytp 443 TGATGCCTAGCGGTATGATCATTAAAGATGCGGAACTTCGCGGAGTGGCG 492
BSNT_04344___ 493 TCAAGCGGGATGATCTGCTCAGCGAAAGAGCTTGATTTGCCGGATGCCCC 542
||||||||.|||||.||.||.||.||.|||||..||.|.||.||.||.||
BL00048___ytp 493 TCAAGCGGCATGATTTGTTCTGCCAAGGAGCTGAATCTCCCAGACGCGCC 542
BSNT_04344___ 543 TGCTGAAAAAGGAATCCTTGTGTTAGAAGGAGACTATGAGGCGGGAGACG 592
....||||||||.||.|||||..|.||.|..|.|..|.|.||.|||||.|
BL00048___ytp 543 GAAGGAAAAAGGCATTCTTGTTCTTGACGACGGCCGTAAAGCAGGAGAAG 592
BSNT_04344___ 593 CATTT-CAGTTTTAG 606
|.||| ||.|||.|
BL00048___ytp 593 CCTTTACATTTTAA- 606
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