Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04345 and BL00047

See Amino acid alignment / Visit BSNT_04345 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:30
# Commandline: needle
#    -asequence dna-align/BSNT_04345___ytpQ.1.5803.seq
#    -bsequence dna-align/BL00047___ytpQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04345___ytpQ-BL00047___ytpQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04345___ytpQ-BL00047___ytpQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04345___ytpQ
# 2: BL00047___ytpQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity:     589/836 (70.5%)
# Similarity:   589/836 (70.5%)
# Gaps:          52/836 ( 6.2%)
# Score: 1998.5
# 
#
#=======================================

BSNT_04345___      1 TTGAAAATGACCTCAAGGAAGCTGTCAGATATACTGAAGCAGCGCCTTCA     50
                     .|||||||||||||||||||.||.||.||||||.|.||..|.||..|.||
BL00047___ytp      1 ATGAAAATGACCTCAAGGAAACTTTCCGATATATTAAAAAAACGTTTGCA     50

BSNT_04345___     51 GCACGAGAATCGCTCCTTTCTGTTTGACAGAGAAAAAGACACCCTCCGTG    100
                     ..|.||.|...|.|||||||..||.|||||.|||||.||||.|       
BL00047___ytp     51 AAATGACAGCTGGTCCTTTCATTTCGACAGGGAAAAGGACAGC-------     93

BSNT_04345___    101 TTGAGGATC--------AAACGACTAAAAAAGGGATTACACTCGATTTGC    142
                     |||||.|||        |||| |||..||||||.|||||||||||..|.|
BL00047___ytp     94 TTGAGAATCGAAGATAAAAAC-ACTGGAAAAGGCATTACACTCGAGCTCC    142

BSNT_04345___    143 CGCCGATTATTGCAAAATGGGAACTGAAAAAAGACGAAGCCATTGATGAG    192
                     ||..|||.||.||.||||||||.|.|||||||||.||.||.|||||.||.
BL00047___ytp    143 CGGGGATCATCGCGAAATGGGAGCAGAAAAAAGATGATGCGATTGACGAA    192

BSNT_04345___    193 ATCGTGTACTAT-----GTCTCCGAAGCGATGACGGCAATGGAAGGGAAG    237
                     .||||.||.|||     |     ||||||.|.|..||.|||.||||..||
BL00047___ytp    193 GTCGTCTATTATACTGAG-----GAAGCGCTCAACGCCATGAAAGGCCAG    237

BSNT_04345___    238 GCTCAGGAAAT-----GACCGGGAAAGAAACTCGCATTTATCCGGTCATC    282
                     .|.||||||||     || ||||||||    .|..||.|||||.||||||
BL00047___ytp    238 TCGCAGGAAATGGAAGGA-CGGGAAAG----CCTGATCTATCCCGTCATC    282

BSNT_04345___    283 CGCTCGACTTCCTTCCCGGACAAGTCCAGCGAAGATATCCCGCTCATTTA    332
                     |||||.||||||||.||.||.||||||||||.||...|.||..|..|||.
BL00047___ytp    283 CGCTCAACTTCCTTTCCCGAGAAGTCCAGCGCAGGCGTTCCCTTGGTTTT    332

BSNT_04345___    333 TGACGATCATACCGCAGAGACAAGAATTTATTACGCGCTAGATCTCGGGA    382
                     |||||..||.||.||.||.|||.|||||||.||.|||||.||.||.||.|
BL00047___ytp    333 TGACGGCCACACGGCTGAAACACGAATTTACTATGCGCTCGACCTTGGCA    382

BSNT_04345___    383 AAACCTACCGTTTAATTGACCAGCGCATGCTTGAGAAAGAAAACTGGACA    432
                     |.||.||||||.|.||.|||.|....||||||||.|||||...|||||||
BL00047___ytp    383 ACACATACCGTCTGATCGACGAAAAAATGCTTGAAAAAGAGGGCTGGACA    432

BSNT_04345___    433 AAAGAGCGGATCAGAGAGACGGCCGCATTTAATCTCCGTTCCCTGCCGAC    482
                     |||||..||||..|.||.||.||..|.|||||.||.||.||.||.|.|||
BL00047___ytp    433 AAAGAAAGGATTCGGGAAACAGCTTCCTTTAACCTTCGCTCGCTCCAGAC    482

BSNT_04345___    483 GGTTGTCAAAGAGGATACG--GTTGCCGGCAATTACTTTTATTTCTTCAG    530
                     .|||||.|||||  |.|||  ||.||.||||||.||||.||.||.|||||
BL00047___ytp    483 CGTTGTAAAAGA--AGACGAAGTCGCAGGCAATCACTTCTACTTTTTCAG    530

BSNT_04345___    531 GGCAAACGACGGATACGATGCAAGCCGGATTTTGAACGAAGCGA-TCTTA    579
                     .||.||.|||||.||.||.||.|||.||.|.|||||||||.||| |||..
BL00047___ytp    531 AGCGAATGACGGCTATGACGCCAGCAGGGTGTTGAACGAATCGATTCTCG    580

BSNT_04345___    580 AATGAGTATAAGCAGCATGCAGAAGGGGAGCTGGCGATCTCTGTTCCTCA    629
                     .| ||||||.||.|..|.||.||||||...||.||..|.||..||||.||
BL00047___ytp    581 CA-GAGTATGAGAAAAACGCGGAAGGGACCCTCGCCGTGTCAATTCCGCA    629

BSNT_04345___    630 TCAGGACGTTTTGATTCTTGCTGACATCCGGAATGAAT-CGGGGTATGAT    678
                     .|||||.||..|||||.||||.||||||||.||| ||| |.||.||.|||
BL00047___ytp    630 CCAGGATGTGCTGATTATTGCCGACATCCGCAAT-AATGCCGGATACGAT    678

BSNT_04345___    679 ATTCTAGGACAAATGTCGATGAGCTTCTTTGCAGGCGGCACCGTCCCGAT    728
                     ||.||.||.|||||||||||||||||.||||||..||||||.||.|||||
BL00047___ytp    679 ATACTCGGGCAAATGTCGATGAGCTTTTTTGCAAACGGCACAGTGCCGAT    728

BSNT_04345___    729 TACCGCCCTTTCATTTTTGTACAATGAAGGAAAGCTGGAACCGGTGTTTA    778
                     .||.||.|||||.||..||||..|.||.||||||||.||||||.|.||||
BL00047___ytp    729 CACTGCGCTTTCTTTCCTGTATGAGGATGGAAAGCTTGAACCGATCTTTA    778

BSNT_04345___    779 TCCTGGCGAAAAGCCGTCCGAAAAAG----GATTAG    810
                     |.|||||.||||.|||.||.||||||    ||    
BL00047___ytp    779 TTCTGGCTAAAAACCGCCCTAAAAAGAAATGA----    810


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