Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04353 and BL00044
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_04353___malS.1.5803.seq
# -bsequence dna-align/BL00044___malS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04353___malS-BL00044___malS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04353___malS-BL00044___malS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04353___malS
# 2: BL00044___malS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1765
# Identity: 1254/1765 (71.0%)
# Similarity: 1254/1765 (71.0%)
# Gaps: 131/1765 ( 7.4%)
# Score: 4285.5
#
#
#=======================================
BSNT_04353___ 1 GTGA-----AACAATTCAAAGTAACAAACGAAGGAGACATTCAAACAAC- 44
|||| ||.||.|.|||..|||||..||..||||| .|
BL00044___mal 1 GTGAGCCACAATAAATTAAATGAACAAGTGATCGAGAC---------GCG 41
BSNT_04353___ 45 ATTAAGAGGCCTTGAAGTGCTCTCTGTTCCTTTTTTGAACAAAGGTGTTG 94
.||||||||..|||||||.||..|...|||..|.|||||||||||.||||
BL00044___mal 42 GTTAAGAGGATTTGAAGTCCTTGCGACTCCCCTGTTGAACAAAGGGGTTG 91
BSNT_04353___ 95 CTTTTACTGAGGAAGAAAGAAAAGAACTTGGTTTAAAAGGCTTTCTGCCG 144
|.||..||..|||.|||||..|.|..||.||.||.|.|||.||.||.||.
BL00044___mal 92 CCTTCCCTCCGGAGGAAAGGGATGCTCTCGGCTTGACAGGATTGCTTCCT 141
BSNT_04353___ 145 CCCAAGGTATTAACAATTGACGATCAGGCGAAAAGAGCGTATGAACAATA 194
||||||||..|.||..||||.||.|||||.|||.|.||||||.|||| .
BL00044___mal 142 CCCAAGGTGCTGACGCTTGAAGAACAGGCAAAACGGGCGTATAAACA--G 189
BSNT_04353___ 195 TTCC--GCACAGCCTGACGATTTGAGCAAAAATGTCTATTTAACTGCGCT 242
|||| .||||||||||.||||||||||||||.|||||||||||.|||||
BL00044___mal 190 TTCCAATCACAGCCTGATGATTTGAGCAAAAACGTCTATTTAACGGCGCT 239
BSNT_04353___ 243 GCACGATCGGAATGAAACGCTGTTTTACCGCCTGTTAAATGACCATTTAG 292
.||.|||||.||||||..||||||.|||.|.||..|.||.||||||.|..
BL00044___mal 240 TCATGATCGAAATGAAGTGCTGTTCTACAGGCTTCTGAACGACCATATGA 289
BSNT_04353___ 293 GGGAAATGCTCCCGATTGTCTACACACCGACAGTCGGAACGGCAATCCAG 342
..||||||||.|||||||||||.||.|||||.||||||||||||||.|||
BL00044___mal 290 CAGAAATGCTGCCGATTGTCTATACCCCGACTGTCGGAACGGCAATACAG 339
BSNT_04353___ 343 AGATACAGCCATGAATACAGAAAACCACGAGGGCTCTATCTGTCAATCGA 392
..|||||||||||||||||||||.||.||.|||||.|.|.||||..|..|
BL00044___mal 340 CAATACAGCCATGAATACAGAAAGCCGCGGGGGCTGTTTTTGTCGGTTAA 389
BSNT_04353___ 393 TGACCCGGACGGTATGAAAGAAGCATTTAAACAGTAT--------AAAGA 434
||||||.||.||.||||||...||||||.|| |.|.| ||||
BL00044___mal 390 TGACCCTGAAGGCATGAAAACGGCATTTGAA-AATCTGGCCGCTAAAAG- 437
BSNT_04353___ 435 TCAAAGCGATAC-GATCGATTTAATTGTTGCAACTGATGCGGAAGGAATT 483
|||| | |||||||||.||.||.||.||||||||.|||||||||
BL00044___mal 438 ---AAGC----CGGATCGATTTGATCGTGGCCACTGATGCTGAAGGAATT 480
BSNT_04353___ 484 TTAGGGATCGGTGACTGGGGCGTCGGAGGAATCGCGATTTCTATTGGAAA 533
.|.||.|||||.||.|||||.|||||.||.|||||.|||||.||.|||||
BL00044___mal 481 CTCGGAATCGGGGATTGGGGAGTCGGCGGCATCGCCATTTCGATCGGAAA 530
BSNT_04353___ 534 GCTGGCGGTTTATACAGCGGCTGCGGGCATTGATCCGAGCAGAGTGCTGG 583
|||.||.||||||||.||.|||||||||||.|||||.|.|||.||.|||.
BL00044___mal 531 GCTTGCTGTTTATACTGCAGCTGCGGGCATCGATCCTAACAGGGTCCTGC 580
BSNT_04353___ 584 CTGTTGTTTTAGATGCGGGGACAAATCAGGAGAGCCTCTTGAACGATCCG 633
|.||.||..|.|||||||||||.||.|||||.||.||..|||||||||||
BL00044___mal 581 CAGTAGTCATTGATGCGGGGACGAACCAGGAAAGGCTTCTGAACGATCCG 630
BSNT_04353___ 634 CTTTATGTCGGCAACCAGCATTCTAGAGTGCGCGGAGAACGCTATGACCA 683
|||||||||||.||.||||||||.||..|..|.||.||.||.|||||...
BL00044___mal 631 CTTTATGTCGGGAATCAGCATTCGAGGATCAGGGGCGAGCGTTATGAATC 680
BSNT_04353___ 684 ATTTATTGACGACTACGTT----GCGCTGGCGAGAGAAACATTTCCGAAT 729
.||||||||..|.|||||| .|||...|||| ||.||||||...
BL00044___mal 681 GTTTATTGATCAATACGTTCAAATCGCAACCGAG----ACGTTTCCGGGC 726
BSNT_04353___ 730 GCATTGCTGCATTGGGAGGATTTCGGGGCGAAAAACGCTCG-AAGCATTT 778
|..||||||||.|||||.||||||||..||.|.|||||.|| .|| ||||
BL00044___mal 727 GTTTTGCTGCACTGGGAAGATTTCGGAACGCAGAACGCGCGTCAG-ATTT 775
BSNT_04353___ 779 TGAAACGCTATAAAGATAAAGTGTGTACCTTCAATGATGATATCCAAGGA 828
|||||...||.|||||.|||.|.||.|||||.||||||||.||.|||||.
BL00044___mal 776 TGAAAAAATACAAAGACAAAATTTGCACCTTTAATGATGACATTCAAGGC 825
BSNT_04353___ 829 ACTGGCGCTGTTTCTTTGGCCGCAGT-CTTATCCTGTGC-------AAAA 870
||.||.||||||.|..|.||.||.|| || ||| ||||
BL00044___mal 826 ACAGGAGCTGTTACCCTCGCAGCGGTGCT-------TGCGGCCGTTAAAA 868
BSNT_04353___ 871 GCGTCTAAAGTTCCATTGAGGGATCACAGAGTTGTTATATTCGGAGCGGG 920
..||.|||.|.||..|||.||||||.|.|||.||.|||||.||||||||
BL00044___mal 869 -TATCAAAAATGCCGCTGAAGGATCATAAAGTGGTCATATTTGGAGCGGG 917
BSNT_04353___ 921 AACGGCAGGAATCGGAATTGCCGAACAGCTGCGGGAAGCATTGGTGCGCG 970
.|||||.||||||||.|.|||.||.||..|.||.|..|||.|.||.|..|
BL00044___mal 918 GACGGCCGGAATCGGCAATGCTGAGCAAATTCGCGCCGCACTCGTTCAAG 967
BSNT_04353___ 971 AGGGACTGAGTGAAGAAGAATCATACAAGCGCTTCTGGTGCATAGACAGA 1020
|||||.||...|||||.|||||||||...||.||.|||||..|.||..|.
BL00044___mal 968 AGGGAGTGTCGGAAGAGGAATCATACCGCCGTTTTTGGTGTGTTGATCGG 1017
BSNT_04353___ 1021 AACGGGCTGTTAACAGATGATATGGATCAGCTTCTTG------ATTTCCA 1064
|||||..||.|.|||||||||||| |.|..|||| ||| ||
BL00044___mal 1018 AACGGTTTGCTGACAGATGATATG----AACGACTTGCAGGACATT--CA 1061
BSNT_04353___ 1065 AAAGCCGTATGCTCGTTCGGCTGATGAAGTAAAGGATTATCAG-CGGAAC 1113
|.|.||||||||..|..|.|||||.||.|||||.||.| |||| ||||||
BL00044___mal 1062 ACAACCGTATGCAAGGCCTGCTGACGAGGTAAAAGACT-TCAGCCGGAAC 1110
BSNT_04353___ 1114 GGAGACGGCGGAGGC-ATTGATCTTCTTGAAGTGGTCCGGCAGGCAAAA- 1161
|| ..|||.|||.|| ||||||||.||.||.||||| .||||
BL00044___mal 1111 GG-CCCGGGGGATGCAATTGATCTGCTCGAGGTGGT--------TAAAAG 1151
BSNT_04353___ 1162 -------CCGACGATCCTGATCGGCACATCTACGGTTTCCGGCGCTTTCA 1204
||.||.||..||||.||.||.||.|||||.||.|||||.||.|
BL00044___mal 1152 AGTGCAGCCTACCATTTTGATTGGAACCTCGACGGTATCGGGCGCATTTA 1201
BSNT_04353___ 1205 CTGAAGAAATTGTAAAAGAAATGGCGTCACATGTGAAACGGCCCGCGATT 1254
|.||.||||||||||||||||||||....||||||||||||||.||.||.
BL00044___mal 1202 CAGAGGAAATTGTAAAAGAAATGGCAAAGCATGTGAAACGGCCGGCTATA 1251
BSNT_04353___ 1255 TTGCCAATGTCAAATCCGACAACTCTTTCTGAAGCAAAGCCGGAGGATTT 1304
||.||.|||||.||||||||..|..|.||||||||||.|||.||.|||||
BL00044___mal 1252 TTCCCGATGTCCAATCCGACGCCGTTATCTGAAGCAAGGCCTGAAGATTT 1301
BSNT_04353___ 1305 AATCGAATGGACAGAAGGCCGTGCGCTGATCACGACAGGAAGCCCGTTCC 1354
.|||.|.|||||.|||||.||.|||||..||.|.||||||||||||||..
BL00044___mal 1302 GATCAATTGGACGGAAGGGCGGGCGCTCGTCGCCACAGGAAGCCCGTTTG 1351
BSNT_04353___ 1355 CGCCAGTTGAATATAACGG----AGTTA--CGTATCATATCGGGCAGGCA 1398
||||.||.|||||.|.||| .|||| || |||||.|||||.
BL00044___mal 1352 CGCCTGTGGAATACAGCGGCACCCGTTATGCG------ATCGGCCAGGCG 1395
BSNT_04353___ 1399 AACAACGCGCTTGTCTTCCCTGGTCTCGGTCTTGGAACGATTGTTACCAA 1448
||.||.||..||||.|||||.||.||.||.||.||||||.|.||..|.||
BL00044___mal 1396 AATAATGCCTTTGTATTCCCCGGCCTTGGGCTCGGAACGCTCGTATCAAA 1445
BSNT_04353___ 1449 ATCAAAATTAATTACCGACGGCATGTTTGAAG-CATGTGCCCGG--GCAA 1495
|.|||.|.|.|||||.|||..|||||||.|.| || ||.||| ||.|
BL00044___mal 1446 AGCAAGACTGATTACGGACAACATGTTTTACGCCA---GCGCGGCTGCGA 1492
BSNT_04353___ 1496 TCGCAGGTATGGTCAATGTCGGG--GTGCCTGGCGCGCCGATGCTTCCGA 1543
||||.||||||||..|| .|||| | |||.|||||..||.|.||||||.
BL00044___mal 1493 TCGCGGGTATGGTTGAT-ACGGGCCG-GCCCGGCGCCGCGCTTCTTCCGG 1540
BSNT_04353___ 1544 AAGTTGAAGATTTGCGCACTGTTTCGGCAACCGTTG---CGGTTGAAGTC 1590
|||||||.|||||||||||.|||||.||||||||.| |||.| |||
BL00044___mal 1541 AAGTTGAGGATTTGCGCACGGTTTCCGCAACCGTGGCAACGGCT---GTC 1587
BSNT_04353___ 1591 GCAAAAACCGCGAT-GAAGGAAGGCGTTGCTACGGAA---GAGCCAGAAG 1636
...|||.|.||.|| ||| ||.||.|||| |.||| |||||.||.|
BL00044___mal 1588 ATCAAAGCAGCCATAGAA-GACGGAGTTG---CAGAAAACGAGCCGGACG 1633
BSNT_04353___ 1637 ACATTATACAGGCAGTGCAGGATGCGATGTGGTATCCGGTATACAAACCG 1686
|..|.||.|||||.||||||||||||||||||.|||||||.|||...|||
BL00044___mal 1634 ATGTGATTCAGGCGGTGCAGGATGCGATGTGGCATCCGGTCTACCGGCCG 1683
BSNT_04353___ 1687 ATTCGCGCGATATAA 1701
||||||||.||||||
BL00044___mal 1684 ATTCGCGCCATATAA 1698
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