Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04355 and BL00043

See Amino acid alignment / Visit BSNT_04355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:30
# Commandline: needle
#    -asequence dna-align/BSNT_04355___ytnP.1.5803.seq
#    -bsequence dna-align/BL00043___ytnP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04355___ytnP-BL00043___ytnP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04355___ytnP-BL00043___ytnP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04355___ytnP
# 2: BL00043___ytnP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity:     619/875 (70.7%)
# Similarity:   619/875 (70.7%)
# Gaps:          67/875 ( 7.7%)
# Score: 2080.5
# 
#
#=======================================

BSNT_04355___      1 ATGGAAACAATGAAAATTGGAAACATCACGTTGACCTGGCTTGACGGAGG     50
                     ||||||||..|.|.|||.|||...||||.|.||||.|||||..|||||||
BL00043___ytn      1 ATGGAAACTTTAACAATCGGACGAATCAAGCTGACATGGCTGAACGGAGG     50

BSNT_04355___     51 CGTGACGCATATGGACGGAGGCGCCATGTTCGGCGTTGTGCCAAAGCCGC    100
                     |||.|||||.|||||||||||||||||||||||||||||.||.|||||||
BL00043___ytn     51 CGTCACGCACATGGACGGAGGCGCCATGTTCGGCGTTGTTCCCAAGCCGC    100

BSNT_04355___    101 TTTGGTCTAAAAAATATCCAGTCAATGAAAAAAACCAGATTGAACTAAGG    150
                     |||||||.|||||.|||...|.||||||.|||||.||.||.|||||.||.
BL00043___ytn    101 TTTGGTCAAAAAAGTATTACGCCAATGAGAAAAATCAAATCGAACTTAGA    150

BSNT_04355___    151 ACAGACCCTATTTTGATTCAAAAGGATGGGCTCAATATCATCGTTGA-CG    199
                     |||||.|||||..|..||||.||.||.||   ||..|.|.| |.||| ||
BL00043___ytn    151 ACAGATCCTATACTAGTTCAGAAAGACGG---CACGAACCT-GCTGATCG    196

BSNT_04355___    200 ---CCGGAATTGGGTCCGGCAAGCTGACTGATAAACAAAAACGAAACTAT    246
                        ||||.||.|||..||||||.|||||.|||||.|||||||||||.||.
BL00043___ytn    197 ATTCCGGTATCGGGCTCGGCAAACTGACGGATAAGCAAAAACGAAATTAC    246

BSNT_04355___    247 GGCGTGACACAAGAGTCG--AAT--GTGAAACCCTCATTAGCTGCACTCG    292
                     ||.||.||..||||.|||  |||  .|||    |||.|||...|||||||
BL00043___ytn    247 GGAGTCACCGAAGAATCGTCAATTGATGA----CTCGTTAAAAGCACTCG    292

BSNT_04355___    293 G---ATTAACGGTTGCCGATATAGATGTGATCGC------AATGACACAC    333
                     |   .|.|||||         .||||.|.|..||      .|||||.||.
BL00043___ytn    293 GGCTCTCAACGG---------AAGATATCAAAGCCGTTTTGATGACTCAT    333

BSNT_04355___    334 CTTCATTTTGATCATGCATGCGGTTTAACGGAATATGAAGGTGAACGGCT    383
                     ||.||||||||.|||||||||||.||.|||...|||||.||.|||.|.||
BL00043___ytn    334 CTCCATTTTGACCATGCATGCGGATTGACGCGCTATGAGGGAGAAAGCCT    383

BSNT_04355___    384 CGTCTCTGTCTTTCCGAATGCAGTGATTTATACATCAGCTGTTGAATGGG    433
                     .||.||.||.|||||.|||||.|.||||||.||.||.||..|.|||||||
BL00043___ytn    384 TGTTTCCGTGTTTCCAAATGCGGCGATTTACACGTCTGCAATCGAATGGG    433

BSNT_04355___    434 ACGAAATGCGCCATCCGAATATCAGGTCGAAAAATACGTATTGGAAAGAA    483
                     |.||.|||.|..|.|||||||||.|.||.||||||||.|||||||||||.
BL00043___ytn    434 AAGAGATGAGAAACCCGAATATCCGCTCCAAAAATACATATTGGAAAGAG    483

BSNT_04355___    484 AATTGGGAGGCTGT--AGC-TGGCCAAGTCAAAACCTTTGA--AGACACC    528
                     ||.|||||.||.||  ||| |   |||||.|.||||||.||  ||| |.|
BL00043___ytn    484 AACTGGGAAGCGGTTCAGCAT---CAAGTGAGAACCTTCGACGAGA-AGC    529

BSNT_04355___    529 TTAACGAT---CACAGAGGGTATTACAATGCATCACACCGGAGGCCATAG    575
                     ||.|.|.|   |.|    ||.||.||.||||||||.||.||.|||||.||
BL00043___ytn    530 TTGAAGTTTTGCCC----GGAATCACGATGCATCATACAGGCGGCCACAG    575

BSNT_04355___    576 CGACGGACA--CAGTG-TCCTGATATGCGAGGATGCGGGTGAAACTGCCG    622
                     ||||||.||  |.||| ||.|..|   |||.|||||.||||||||.|||.
BL00043___ytn    576 CGACGGCCATTCCGTGATCGTTCT---CGAAGATGCCGGTGAAACGGCCC    622

BSNT_04355___    623 TACATATGGCAGATCTGATGCCGACACATGCCCACCGCAATCCGCTATGG    672
                     |.||||||||.||..|.||||||||.||.|||||.|..|||||.||.|||
BL00043___ytn    623 TTCATATGGCTGACATTATGCCGACGCACGCCCATCAAAATCCTCTCTGG    672

BSNT_04355___    673 GTGCTGGCTTACGATGATTATCCGATGACCTCTA-TCCCGCAAAAGCAGA    721
                     ||||||||.|||||.||||||||||||||.||.| |.|||| .|||||..
BL00043___ytn    673 GTGCTGGCGTACGACGATTATCCGATGACATCGATTGCCGC-GAAGCAAG    721

BSNT_04355___    722 AATGGCAGGCGTTCGCAGCAGAAAAAGACG-CTGGTTTATTTTTTATCAT    770
                     .||||||||||...||.||.||.|||.||| |||||..||||||||.||.
BL00043___ytn    722 CATGGCAGGCGAAGGCCGCCGAGAAAAACGCCTGGTACATTTTTTACCAC    771

BSNT_04355___    771 GATGCCGAATATCGCGCGCTTCAATGGGATGAGGACGGAAGCATCAAAGA    820
                     ||||||...||..|.||..|..||||||||||..||||....||...|||
BL00043___ytn    772 GATGCCCTTTACAGAGCATTAAAATGGGATGAAAACGGCGATATTGCAGA    821

BSNT_04355___    821 TTCAGT--CAAGCGAATGA------    837
                     .|||||  .|||.|||.|.      
BL00043___ytn    822 GTCAGTAAAAAGAGAAAGCCGCTAG    846


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04355 and BL00043

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
