Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04367 and BL00037

See Amino acid alignment / Visit BSNT_04367 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_04367___ytlP.1.5803.seq
#    -bsequence dna-align/BL00037___ytlP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04367___ytlP-BL00037___ytlP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04367___ytlP-BL00037___ytlP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04367___ytlP
# 2: BL00037___ytlP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity:     348/699 (49.8%)
# Similarity:   348/699 (49.8%)
# Gaps:         240/699 (34.3%)
# Score: 767.5
# 
#
#=======================================

BSNT_04367___      1 ATGCCAGATATACGGCCTCATTATTTCATCGGCGTTCCCATACCTGAGGG     50
                     |||.|||..|.|   ||.|||||.||.||.||..||||.||.|| |..||
BL00037___ytl      1 ATGTCAGTCAAA---CCGCATTACTTTATTGGAATTCCAATTCC-GGCGG     46

BSNT_04367___     51 A----ATTGCAAATCCGATCTACCAGGCTGCGAAAAACG------AACCG     90
                     |    |.||   |||||.|.||.|          |||||      |.|||
BL00037___ytl     47 AGCTTAGTG---ATCCGCTTTATC----------AAACGGTCAGCAGCCG     83

BSNT_04367___     91 ------ATATTGACGTTTCAAAAATGGGTGCACCCGCTTGACTATCATAT    134
                           ||.||  |.|||||.|.|||||||||.||..|.|||||.||.||
BL00037___ytl     84 TCCGGAATTTT--CTTTTCATAGATGGGTGCATCCTTTGGACTACCACAT    131

BSNT_04367___    135 CACGTTAATTTTTCTCGGAGCGGCGGATGAGACACAAATAAAGAAGCTTG    184
                     |||..|..|.||.|||||..|.||.||            ||||.|||   
BL00037___ytl    132 CACCCTCGTGTTCCTCGGCTCTGCTGA------------AAAGGAGC---    166

BSNT_04367___    185 AAGGTTCGCTAGCAGA-GATTGCT-TCAG----AAATTGA---CCCAT--    223
                           .|||.|| || |.||||| .|||    ||..|||   ||.||  
BL00037___ytl    167 ------AGCTGGC-GATGCTTGCTGGCAGCCTCAAGCTGATCTCCGATGA    209

BSNT_04367___    224 ----------TTTCAATTGAGTTTGACAAGAT-AGATGTATTCGGCGACC    262
                               ||||     ||.|||   .||| |.|.|| ||||| .|||
BL00037___ytl    210 GACGGCTCCGTTTC-----AGCTTG---CGATAAAACGT-TTCGG-AACC    249

BSNT_04367___    263 -GCAGAAGGCCG-------CGCG--TTTTACATCTGGAGCCAAAGAAAAA    302
                      .|.|||.||||       ||.|  ||.|.|||.||||.||   |.||.|
BL00037___ytl    250 TTCGGAAAGCCGTCGGAGCCGAGAATTCTTCATGTGGAACC---GGAATA    296

BSNT_04367___    303 C-AAAACGC-----TTGATAGACTGCGGGAACATACGAAGCAGGCTG---    343
                     | .|..|||     ||.||   .||.|||||||...||||||.||.|   
BL00037___ytl    297 CTCAGCCGCTCTCTTTCAT---GTGAGGGAACAGGTGAAGCATGCAGCGG    343

BSNT_04367___    344 -TCCTTCAGGCCGGCTTTCAAGTGGAAAAAAGACCGTATCATCCTCATAT    392
                      |.|    |||.||||||.||.|.||||||.|.||.|.||||||.|||.|
BL00037___ytl    344 ATGC----GGCGGGCTTTGAAATTGAAAAACGGCCTTTTCATCCACATGT    389

BSNT_04367___    393 GACGCTGGCAAGAAAATGGACAGGCGAAAATGGATTTCCAG-CTCATGTT    441
                     ||||.|.||.|||||.|||         |||||||   |.| ||| |.||
BL00037___ytl    390 GACGGTCGCCAGAAAGTGG---------AATGGAT---CGGCCTC-TTTT    426

BSNT_04367___    442 ---------------CCGTTTGAAAGCGGCGAAGTTTCGATGATGGCTGA    476
                                    |||.|||||   |.||..||.||..|.|.|||   
BL00037___ytl    427 AACGGACGCCTGGAGCCGCTTGAA---GACGCGGTGTCTTTTACGGC---    470

BSNT_04367___    477 AC--GATTTTCGC--TCTTTCAAATACACTT-GAACCAATCA-----CCA    516
                      |  |..||||.|  |||||||||..||.|| ||      ||     ||.
BL00037___ytl    471 -CCGGCATTTCACCATCTTTCAAACCCATTTAGA------CAGGCTTCCC    513

BSNT_04367___    517 AAATACGAGGAAATATTCAA----ATTTCAATTATC--TTAA--------    552
                     |||||||||.|     ||||    .||||.||| ||  ..||        
BL00037___ytl    514 AAATACGAGCA-----TCAAGCCGTTTTCCATT-TCGGCGAACGGCCGGC    557

BSNT_04367___    552 -------------------------------------------------    552
                                                                      
BL00037___ytl    558 TGCAGAAAAGCAAGATTCGGAGATGAACGCAGATGGCACAGATTATTAA    606


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