Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04367 and BL00037
See
Amino acid alignment /
Visit
BSNT_04367 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_04367___ytlP.1.5803.seq
# -bsequence dna-align/BL00037___ytlP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04367___ytlP-BL00037___ytlP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04367___ytlP-BL00037___ytlP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04367___ytlP
# 2: BL00037___ytlP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity: 348/699 (49.8%)
# Similarity: 348/699 (49.8%)
# Gaps: 240/699 (34.3%)
# Score: 767.5
#
#
#=======================================
BSNT_04367___ 1 ATGCCAGATATACGGCCTCATTATTTCATCGGCGTTCCCATACCTGAGGG 50
|||.|||..|.| ||.|||||.||.||.||..||||.||.|| |..||
BL00037___ytl 1 ATGTCAGTCAAA---CCGCATTACTTTATTGGAATTCCAATTCC-GGCGG 46
BSNT_04367___ 51 A----ATTGCAAATCCGATCTACCAGGCTGCGAAAAACG------AACCG 90
| |.|| |||||.|.||.| ||||| |.|||
BL00037___ytl 47 AGCTTAGTG---ATCCGCTTTATC----------AAACGGTCAGCAGCCG 83
BSNT_04367___ 91 ------ATATTGACGTTTCAAAAATGGGTGCACCCGCTTGACTATCATAT 134
||.|| |.|||||.|.|||||||||.||..|.|||||.||.||
BL00037___ytl 84 TCCGGAATTTT--CTTTTCATAGATGGGTGCATCCTTTGGACTACCACAT 131
BSNT_04367___ 135 CACGTTAATTTTTCTCGGAGCGGCGGATGAGACACAAATAAAGAAGCTTG 184
|||..|..|.||.|||||..|.||.|| ||||.|||
BL00037___ytl 132 CACCCTCGTGTTCCTCGGCTCTGCTGA------------AAAGGAGC--- 166
BSNT_04367___ 185 AAGGTTCGCTAGCAGA-GATTGCT-TCAG----AAATTGA---CCCAT-- 223
.|||.|| || |.||||| .||| ||..||| ||.||
BL00037___ytl 167 ------AGCTGGC-GATGCTTGCTGGCAGCCTCAAGCTGATCTCCGATGA 209
BSNT_04367___ 224 ----------TTTCAATTGAGTTTGACAAGAT-AGATGTATTCGGCGACC 262
|||| ||.||| .||| |.|.|| ||||| .|||
BL00037___ytl 210 GACGGCTCCGTTTC-----AGCTTG---CGATAAAACGT-TTCGG-AACC 249
BSNT_04367___ 263 -GCAGAAGGCCG-------CGCG--TTTTACATCTGGAGCCAAAGAAAAA 302
.|.|||.|||| ||.| ||.|.|||.||||.|| |.||.|
BL00037___ytl 250 TTCGGAAAGCCGTCGGAGCCGAGAATTCTTCATGTGGAACC---GGAATA 296
BSNT_04367___ 303 C-AAAACGC-----TTGATAGACTGCGGGAACATACGAAGCAGGCTG--- 343
| .|..||| ||.|| .||.|||||||...||||||.||.|
BL00037___ytl 297 CTCAGCCGCTCTCTTTCAT---GTGAGGGAACAGGTGAAGCATGCAGCGG 343
BSNT_04367___ 344 -TCCTTCAGGCCGGCTTTCAAGTGGAAAAAAGACCGTATCATCCTCATAT 392
|.| |||.||||||.||.|.||||||.|.||.|.||||||.|||.|
BL00037___ytl 344 ATGC----GGCGGGCTTTGAAATTGAAAAACGGCCTTTTCATCCACATGT 389
BSNT_04367___ 393 GACGCTGGCAAGAAAATGGACAGGCGAAAATGGATTTCCAG-CTCATGTT 441
||||.|.||.|||||.||| ||||||| |.| ||| |.||
BL00037___ytl 390 GACGGTCGCCAGAAAGTGG---------AATGGAT---CGGCCTC-TTTT 426
BSNT_04367___ 442 ---------------CCGTTTGAAAGCGGCGAAGTTTCGATGATGGCTGA 476
|||.||||| |.||..||.||..|.|.|||
BL00037___ytl 427 AACGGACGCCTGGAGCCGCTTGAA---GACGCGGTGTCTTTTACGGC--- 470
BSNT_04367___ 477 AC--GATTTTCGC--TCTTTCAAATACACTT-GAACCAATCA-----CCA 516
| |..||||.| |||||||||..||.|| || || ||.
BL00037___ytl 471 -CCGGCATTTCACCATCTTTCAAACCCATTTAGA------CAGGCTTCCC 513
BSNT_04367___ 517 AAATACGAGGAAATATTCAA----ATTTCAATTATC--TTAA-------- 552
|||||||||.| |||| .||||.||| || ..||
BL00037___ytl 514 AAATACGAGCA-----TCAAGCCGTTTTCCATT-TCGGCGAACGGCCGGC 557
BSNT_04367___ 552 ------------------------------------------------- 552
BL00037___ytl 558 TGCAGAAAAGCAAGATTCGGAGATGAACGCAGATGGCACAGATTATTAA 606
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.