Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04369 and BL00035

See Amino acid alignment / Visit BSNT_04369 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:32
# Commandline: needle
#    -asequence dna-align/BSNT_04369___pepV.1.5803.seq
#    -bsequence dna-align/BL00035___ytjP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04369___pepV-BL00035___ytjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04369___pepV-BL00035___ytjP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04369___pepV
# 2: BL00035___ytjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1516
# Identity:     967/1516 (63.8%)
# Similarity:   967/1516 (63.8%)
# Gaps:         248/1516 (16.4%)
# Score: 3003.5
# 
#
#=======================================

BSNT_04369___      1 ATGAACTGGGAAGTTGAAGTGATCAGAAAAAAAGA-GGATTTAATTCGT-     48
                     ||||||||||||...|||||..|     ||||||| |||.|.|..|||| 
BL00035___ytj      1 ATGAACTGGGAACAGGAAGTTTT-----AAAAAGACGGAATGAGATCGTT     45

BSNT_04369___     49 ---GATACGCAGGAATTTTTGAGAATCAACAGTGTCATGGACGAAACAAC     95
                        ||||..||||..|||||.|.|||||||||.|||.|.||||||...||
BL00035___ytj     46 GAGGATATTCAGGGTTTTTTAAAAATCAACAGCGTCCTTGACGAAGAGAC     95

BSNT_04369___     96 CGCCGGACC----CGGTAAACCGTTTGGAGAAGGGGTAAACGCCAGCCTG    141
                     .||.||.||    |||    |||||||||.|||||.|..|.|...|||||
BL00035___ytj     96 GGCGGGTCCGGGACGG----CCGTTTGGAAAAGGGATTCAAGAATGCCTG    141

BSNT_04369___    142 ACTTCATTGCTGGAGCT--TGGAGAAA----AAGAA---GGCTTTACAAC    182
                     ||         .|.|||  ||.|.|||    |.|||   ||.|||||...
BL00035___ytj    142 AC---------AGCGCTTCTGAATAAAGGGGAGGAAAGCGGGTTTACGGT    182

BSNT_04369___    183 AAAAAATCTTGACGGCTTTGCAGGTCATATTGAATGGGGGGAGGGCGATG    232
                     ||||||.||||||||.|.||||||.|||||.|||||||||.|.|||||.|
BL00035___ytj    183 AAAAAACCTTGACGGTTATGCAGGCCATATCGAATGGGGGAAAGGCGAGG    232

BSNT_04369___    233 ACATTATCGGCGTACTTTGCCATGTTGACGTCGTGCCGCCGGGAGATGGG    282
                     |.|||||||||||.||||||||..||||.|||||.||.||.||.|||||.
BL00035___ytj    233 AGATTATCGGCGTGCTTTGCCACATTGATGTCGTTCCTCCCGGCGATGGA    282

BSNT_04369___    283 TGGACGAGTGATCCATTTTCAGCTGAAATCCGCAA----CGGACGGATTT    328
                     ||||||||.||.||.|||.||||||||||    ||    |||.||.||.|
BL00035___ytj    283 TGGACGAGCGACCCGTTTGCAGCTGAAAT----AAGGGGCGGCCGAATCT    328

BSNT_04369___    329 ATGCAAGGGGCGCCATTGATGACAAAGGCCCGACAATGGCGGCATTCTAC    378
                     |||||||.||.||..|||||||.|||||.|||||||||||.||.||..|.
BL00035___ytj    329 ATGCAAGAGGAGCGCTTGATGATAAAGGGCCGACAATGGCCGCGTTTCAT    378

BSNT_04369___    379 GCGCTGAAAATCGTGAAAGACATGAATTTGCCCC----TGTCCAAGCGAG    424
                     ||..|.|||||.||.||||||..|    .|||.|    |.||.||.||..
BL00035___ytj    379 GCATTAAAAATTGTCAAAGACTCG----GGCCTCCCTTTATCAAAACGGA    424

BSNT_04369___    425 TCAGAATGATTATCGGAACAGATGAAGAAAGTGATTGGAGATGCGTAGAG    474
                     |||||||||||||.|||||.|||||||||||.||.|||.|.||.||.|||
BL00035___ytj    425 TCAGAATGATTATTGGAACCGATGAAGAAAGCGACTGGCGCTGTGTGGAG    474

BSNT_04369___    475 CATTATTTCAAGCATGAAGAAATGCCAACAATGGGC----TTTGCGCCTG    520
                     |||||.||.||.||.|||||||||||    .|.|||    ||||||||||
BL00035___ytj    475 CATTACTTTAAACACGAAGAAATGCC----TTCGGCCGGTTTTGCGCCTG    520

BSNT_04369___    521 ACGCCGATTTTCCGATCATTAATGCGGAAAAAGGGATCATCGATGCTTCT    570
                     |.||.|||||||||||.||..||||.||||||||..|.||.||.||..||
BL00035___ytj    521 ATGCTGATTTTCCGATTATCTATGCAGAAAAAGGCCTGATTGACGCAGCT    570

BSNT_04369___    571 TTACTTATTCCACACCGTCCAAATCAAGCAGAACCAAAGGCAGTGC----    616
                     |||...||| .|.||.|     ||||.||.|||.||     .||||    
BL00035___ytj    571 TTAAAAATT-GAAACTG-----ATCAGGCGGAAACA-----GGTGCGGAC    609

BSNT_04369___    617 -TTGTCT------CGTTTCAATCAGGCCTTCGTTTGAACATGGTGCCTGA    659
                      |.||.|      |.||.|..||.||||..||..||||||||||||||||
BL00035___ytj    610 TTAGTATTGGAGGCATTCCGGTCCGGCCGGCGCCTGAACATGGTGCCTGA    659

BSNT_04369___    660 TGCTGCGGAAGCTGTCATTGAAGGG------CCG---AAAAATGAAGAGA    700
                     ||.|||||||||.|||.|.|.||||      |||   .||..||||||| 
BL00035___ytj    660 TGATGCGGAAGCCGTCCTGGCAGGGGCCGTCCCGTCAGAATTTGAAGAG-    708

BSNT_04369___    701 TTCTGTCTTCATTT------------AAAGACATGCTCCGCACGACGGAC    738
                             ||||||            |||||.|..| .|||| ||.||.|
BL00035___ytj    709 --------TCATTTGCCCGGTTTGTAAAAGAAAAAC-GCGCA-GAAGGGC    748

BSNT_04369___    739 --------CAAAAAGG-GGAAGCTGCAATAGAGAACGGACAGCTCATTTT    779
                             |||.|||| ||.||            ||.||     ||||..
BL00035___ytj    749 GTATTCTTCAAGAAGGCGGCAG------------ACTGA-----CATTAA    781

BSNT_04369___    780 GCGTATGTACGGTCTTTC--CTGCCATGCGATGGAACCGAACAATGGGAT    827
                     .||  ||.||||....||  ||  |||||.||||||||.||.||.||..|
BL00035___ytj    782 CCG--TGCACGGCAAATCGGCT--CATGCCATGGAACCTAATAACGGAGT    827

BSNT_04369___    828 CAATGCCGGTATTTTATTGTGCGAATTTCTCCA-GCAGACTGAGCTTGAC    876
                     ||||||||||.|..|.|||..|||.|||.|.|| .||.|.| ..||||||
BL00035___ytj    828 CAATGCCGGTCTCATTTTGGCCGAGTTTTTACATACACAAT-CCCTTGAC    876

BSNT_04369___    877 GATGCAGGAAAGCGG--------TTTGTGCAAGTTGTGACAGATAAG---    915
                             |.|||.|        |||||.|||      || |.|.||   
BL00035___ytj    877 --------AGAGCCGGGCTCCATTTTGTTCAA------AC-GGTTAGCGG    911

BSNT_04369___    916 ----TTCTCAGGTGATACAAGAGGAAAAAAACTGGACATCGACTGTGAGG    961
                         ||..|.||.|||||.|||||.|||||..|.|.|||||.|||....|
BL00035___ytj    912 GGCTTTTGCCGGAGATACGAGAGGGAAAAAGATCGGCATCGGCTGCCGCG    961

BSNT_04369___    962 ATGAAATCAGCGGTGAGCTGACATTAAATGTCGGAACACTGCGCTATAAA   1011
                     ||||.||||||||.||||||||..|.||||||||....||||..|||.||
BL00035___ytj    962 ATGACATCAGCGGAGAGCTGACGCTGAATGTCGGCCGGCTGCAGTATGAA   1011

BSNT_04369___   1012 GAAGGGCAAGGAGGCGAGCTCGGGATCAATATCCGCTATCCTGTGACAGC   1061
                     .||||..||||.||.|||..|...||.||.||||||||||||||.||.|.
BL00035___ytj   1012 CAAGGAAAAGGCGGGGAGGCCCATATTAACATCCGCTATCCTGTTACTGA   1061

BSNT_04369___   1062 AGAAAGC---------AAAGCGATTCGCGATGCATTCGAAAGT-------   1095
                     |||.|||         |||.|      || .||.|||..||.|       
BL00035___ytj   1062 AGAGAGCGGCCGGGTGAAATC------CG-GGCTTTCACAAATAAAAGGC   1104

BSNT_04369___   1096 -----GCATCTGAATTTGATCTGGGAGAATTCAAAGACAGCAAGCCGCAT   1140
                          ||         |.|||.|     .||.||||||||||||||.|||
BL00035___ytj   1105 GCCCGGC---------TCATCAG-----CTTTAAAGACAGCAAGCCACAT   1140

BSNT_04369___   1141 CACGT-------GACCGCAGATCATCCGTTAGTCAAAACCCTGCAAAAGG   1183
                     ||.||       ||||    ||.|.|   |..|||||||.|||||...||
BL00035___ytj   1141 CATGTAGCAAAAGACC----ATGAAC---TGATCAAAACGCTGCAGCGGG   1183

BSNT_04369___   1184 TTTATGAAGGCCAG-CTGGGTAAAAAAGCTGACTTAATCTCAATCGGCGG   1232
                     |.|||||||..||| |.||| .|||..||..|.|||||.||.||||||||
BL00035___ytj   1184 TCTATGAAGAGCAGACAGGG-GAAACGGCACAATTAATTTCCATCGGCGG   1232

BSNT_04369___   1233 GGGGACATATGCGAGATCCTTAAAAGCCGGTGTCGCGTTCGGCCCGCTGT   1282
                     ||.|||||||||..||||..|.||||||||.||.||.|||||||||||||
BL00035___ytj   1233 GGCGACATATGCACGATCACTGAAAGCCGGCGTGGCATTCGGCCCGCTGT   1282

BSNT_04369___   1283 TCCCCGGACGCCCTGACAGCGCACACCAAAAGGATGAATATATCGAAATT   1332
                     |.||.||.||.||||||...||.||.||.||.||.||.|||||.|||||.
BL00035___ytj   1283 TTCCAGGCCGTCCTGACGTTGCCCATCAGAAAGACGAGTATATGGAAATC   1332

BSNT_04369___   1333 GATGACCTGCTGA------GATCGACAGCGTTATATGCTCAGGCCATTTA   1376
                     ||.||..||||||      .|||||      |.|||||.|||||||||||
BL00035___ytj   1333 GACGATTTGCTGAAGGCTGTATCGA------TTTATGCACAGGCCATTTA   1376

BSNT_04369___   1377 CGAGCTTGCAAAATAA   1392
                     .||..|.||.||.||.
BL00035___ytj   1377 TGAATTGGCGAAGTAG   1392


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