Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04375 and BL00034
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_04375.1.5803.seq
# -bsequence dna-align/BL00034___ytzF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04375-BL00034___ytzF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04375-BL00034___ytzF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04375
# 2: BL00034___ytzF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity: 508/783 (64.9%)
# Similarity: 508/783 (64.9%)
# Gaps: 123/783 (15.7%)
# Score: 1547.5
#
#
#=======================================
BSNT_04375 1 ATGAGACTTGATAAGCTGCTTG-CCAACAGCGGGTATGGTTCCAGAAAAG 49
||||||.|.|||||.||| ||| |.||||||||.||||||||.|||||||
BL00034___ytz 1 ATGAGATTGGATAAACTG-TTGTCAAACAGCGGCTATGGTTCGAGAAAAG 49
BSNT_04375 50 AAGTCAAAGCCGTTGTAAAGGCT-------GGAGCCGTG-------ATGA 85
|||||||| .|||.||| ||.||.||| ||||
BL00034___ytz 50 AAGTCAAA-------AAAATGCTGAAAAACGGCGCGGTGCGCGTCAATGA 92
BSNT_04375 86 TCGA--CGGCAAACCTGCCAAAGATGTAAAGGCGCACGTTGATCCTGATA 133
||.| .|.||||...||||||.| |||||||||.||.||..
BL00034___ytz 93 TCAATTAGTCAAAGACGCCAAAAA---------GCACGTTGACCCGGAAT 133
BSNT_04375 134 CGCAGGAGGTGACCGTATACGGGGAACCGGT--TGATTATCGAGAGTTCA 181
|..|.||..|.||.||||||||||.|||.|| || ||.||.||.||.|
BL00034___ytz 134 CAGACGACATCACGGTATACGGGGCACCCGTCATG--TACCGGGAATTTA 181
BSNT_04375 182 TTTATCTT-ATGATGAATAAACCGCAGGGCGTGCTGTCGGCGACTGAGGA 230
|||| ||| ||||||||.||.|||||.||.||||||||.||.||.||.||
BL00034___ytz 182 TTTA-CTTAATGATGAACAAGCCGCAAGGAGTGCTGTCAGCAACAGAAGA 230
BSNT_04375 231 CAGCCGGCAGCAAACAGTGGTCGATCTGCT-GACGCCGGAGGAGATGAGA 279
||||||||||.||||.||.||||||.|||| ||| ||||||..|.||||.
BL00034___ytz 231 CAGCCGGCAGGAAACGGTTGTCGATTTGCTCGAC-CCGGAGCTGCTGAGG 279
BSNT_04375 280 TTTGAGCCATTTCCAGCCGGCAGGCTTGATAAAGATACAGAGGGCTTTTT 329
||||||||.|||||.|.|||.||||||||.||.|||||.|||||..|..|
BL00034___ytz 280 TTTGAGCCGTTTCCTGTCGGAAGGCTTGACAAGGATACTGAGGGACTGCT 329
BSNT_04375 330 GCTGCTCACAAATGATGGCCAGCTCGCACATCGGCTCCTTTCTCCTAAAA 379
|||.||.||.|||||.||.|||.|.|||||.|.|||..|.|||||.||||
BL00034___ytz 330 GCTTCTGACGAATGACGGACAGTTGGCACACCAGCTTTTATCTCCGAAAA 379
BSNT_04375 380 AGCATGTTCCAAAAACGTATGAAGTCCATTTAAAATCA-CAGATT--TCT 426
|.||.||.||.||||||||||||||||||.| .|||.| |.|||| ||.
BL00034___ytz 380 AACACGTACCTAAAACGTATGAAGTCCATGT-CAATAAGCCGATTGATCA 428
BSNT_04375 427 AG-GGAAGACATCTCCGAT----TTGGAAACGGGTGTCTACATAGAGGGC 471
|| ||.| || .||| |||.|||.||| |||.|.||.|..|..
BL00034___ytz 429 AGCGGCA-----CT-TGATCAGCTTGAAAAAGGG-GTCGATATCGGTGAA 471
BSNT_04375 472 GGCTATAAAACAAAGCCGGCAAGAGC---------GGAAATCAAAACAAA 512
||.|||...||.||.||.||...||| ||.||.|.| |||
BL00034___ytz 472 GGATATGTCACGAAACCTGCTGAAGCATCGCTTCTGGCAAGCGA---AAA 518
BSNT_04375 513 CGACAGTGGCAATACCGTGATATACCTGACAATTACAGAAGGAAAATACC 562
||.| ||.| ||..|| ||.|.| |||||||.||.||||||||||..|
BL00034___ytz 519 CGGC-GTAG-AACGCC-TGCTTT---TGACAATAACGGAAGGAAAATTTC 562
BSNT_04375 563 ATCAGGTCAAGCAAATGGCAAAGGCAGTCGGCAATGAAGTGGTTTATTTG 612
|||||||.||...||||...|||||.||||||.||||.||..|.|||||.
BL00034___ytz 563 ATCAGGTGAAAAGAATGCTGAAGGCGGTCGGCCATGACGTCATCTATTTA 612
BSNT_04375 613 AAGCGGCTTTCGATGGGACGCGTTTCCCTAGATCCC--------GCTCTG 654
||||||||....||||| |..|.|| ||||.| |||.|.
BL00034___ytz 613 AAGCGGCTGAAAATGGG--GGATGTC----GATCTCGATGAAGAGCTATT 656
BSNT_04375 655 GCACCCGGAGAATACCGTGAGCTGACAGAGGAAGAGCTTCATTTGCTCAA 704
| ||.||.||||||.|.|||||..|.||..|.||||||
BL00034___ytz 657 G--CCAGGGGAATACAGGGAGCTCTCTGAACACGAGCTT----------- 693
BSNT_04375 705 TGAGCCGC------AAGCA-----------TGA 720
||||| ||.|| |||
BL00034___ytz 694 ---GCCGCATTGCAAAACAAAAAGACACTCTGA 723
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