Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04377 and BL00033
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_04377___ytgP.1.5803.seq
# -bsequence dna-align/BL00033___ytgP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04377___ytgP-BL00033___ytgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04377___ytgP-BL00033___ytgP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04377___ytgP
# 2: BL00033___ytgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1681
# Identity: 1188/1681 (70.7%)
# Similarity: 1188/1681 (70.7%)
# Gaps: 98/1681 ( 5.8%)
# Score: 4023.5
#
#
#=======================================
BSNT_04377___ 1 ATGTCAAGCAAACTGTTAAGAGGCACGTTTGTATTAACGCTCGGTACATA 50
||||||||||||||||||||||||||.||||||||||||||.|||||.||
BL00033___ytg 1 ATGTCAAGCAAACTGTTAAGAGGCACATTTGTATTAACGCTTGGTACCTA 50
BSNT_04377___ 51 TATATCGCGGATTCTGGGGATGGTCTATTTAATTCCCTTC--AGCATTAT 98
|||.||..||||.||.||||||.|.|||.|.|||||.||| ||| .||
BL00033___ytg 51 TATTTCAAGGATCCTCGGGATGATTTATCTGATTCCGTTCGGAGC--CAT 98
BSNT_04377___ 99 GGTCGGGGCGACAGGCGGTGCATTATTTCAATACGGATACAACCAATACA 148
||||||.||.||.||||||||..|.||.||.|||||.||.||.|||||.|
BL00033___ytg 99 GGTCGGTGCCACCGGCGGTGCCCTGTTCCAGTACGGTTATAATCAATATA 148
BSNT_04377___ 149 CTTTATTTTTGAATATTGCTACGATGGGCTTTCCGGCCGCTGTTTCTAAA 198
|..|.|||||.|..|||||.||.|||||.||||||||.||.||.||.||.
BL00033___ytg 149 CGATTTTTTTAAGCATTGCGACCATGGGGTTTCCGGCGGCCGTGTCCAAG 198
BSNT_04377___ 199 TTTGTTTCCAAATATAATTCAAAAGGGGATTATGAGACAAGCAGGAAAAT 248
||||||||.||||||||.||.|..||.||||||||.||||..||.|..||
BL00033___ytg 199 TTTGTTTCGAAATATAACTCGATGGGTGATTATGAAACAACGAGAAGGAT 248
BSNT_04377___ 249 GCTCAAGGCG----GGCATGTCGGTTATGCTCGTCACAGGAATGATAGCC 294
||| ||| ||.||||||.|.||||||||||||||.||.||.||.
BL00033___ytg 249 GCT----GCGCGCCGGAATGTCGATGATGCTCGTCACAGGCATCATTGCT 294
BSNT_04377___ 295 TTTTTCATTCTGTATCTATCGGCTCCGATGTTTGCGGAAATATCGCTGGG 344
||.|.||||||.|||.|.||.||.|||.|.|||||.||.||..|.||.||
BL00033___ytg 295 TTCTCCATTCTATATTTGTCCGCCCCGTTTTTTGCAGAGATGGCCCTTGG 344
BSNT_04377___ 345 AGGCAAGGATAATAACGGCTTGACAATTGATCATGTCGTTTATGTCATCC 394
.||.|..||.||.|||||..||||..||||.||||||||.||||||||.|
BL00033___ytg 345 CGGAACAGAAAACAACGGGCTGACGCTTGAACATGTCGTGTATGTCATTC 394
BSNT_04377___ 395 GCATGGTCAGCTTAGCGCTTTTGGTCGTACCGATTATGAGC-CTTGTCCG 443
||||||||||..|.|||||..||||.||.|||||..|| || ||..||.|
BL00033___ytg 395 GCATGGTCAGTCTCGCGCTACTGGTTGTGCCGATCTTG-GCGCTGATCAG 443
BSNT_04377___ 444 CGGATTCTTTCAAGGGCACCAAATGATGGGTCCGACAGCTGTTTCCCAAG 493
.||.||.||.|||||.|||||.||||||||.||||||||.|||||.||.|
BL00033___ytg 444 AGGCTTTTTCCAAGGTCACCAGATGATGGGGCCGACAGCCGTTTCACAGG 493
BSNT_04377___ 494 TCGTTGAACAGATTGTCCGCATCATCTTTCTATTGAGTGCGACATTCTTG 543
|.||||||||.||||.|.|.|||.||||||||||.|..||.||.|.||||
BL00033___ytg 494 TAGTTGAACAAATTGCCAGAATCGTCTTTCTATTAACGGCCACTTACTTG 543
BSNT_04377___ 544 ATTTTGAAGGTTTTCAACGGCGGCCTTGTCATCGCTGTGGGCTATGCAAC 593
.|..|.||.||.||.||||||||.||||||.|||||||.||||||||.||
BL00033___ytg 544 GTGATCAAAGTATTAAACGGCGGGCTTGTCGTCGCTGTCGGCTATGCGAC 593
BSNT_04377___ 594 CTTCGCAGCGCTGATCGGTGCCTTCGGGGGGCTGGTCGTGCTTTATATTT 643
.||.||.||..|||||||.||.||||..||.|||.||...|||||..|||
BL00033___ytg 594 TTTTGCGGCTTTGATCGGAGCGTTCGCCGGACTGTTCACTCTTTACTTTT 643
BSNT_04377___ 644 ATTGGAACAAACGGAA--GGGCAGCCTGCTGGCGATGATGCCGAATACGG 691
..|||.|.|||.|.|| |||| .||.||||||.|||.||||||....|
BL00033___ytg 644 CCTGGCAGAAAAGAAAAGGGGC--GCTCCTGGCGCTGAAGCCGAACCTTG 691
BSNT_04377___ 692 GTCCGACAGCAAACCTAAGCTACAAAAAAATGTTTTTCGAGCTGTTCAGC 741
.|||..||||..|..|.|..|||....||||||||...||||||||||||
BL00033___ytg 692 TTCCTTCAGCCGATATTACGTACCGGCAAATGTTTAAAGAGCTGTTCAGC 741
BSNT_04377___ 742 TATGCTGCTCCGTACGTTTTTGTCGGACTAGCCATCCCTTTGTATAACTA 791
|||||.||.||.||.||.||||||||.||.||.||.||..|.||..|.||
BL00033___ytg 742 TATGCCGCCCCTTATGTCTTTGTCGGGCTGGCGATACCGCTTTACCAGTA 791
BSNT_04377___ 792 TATTGATACAAATACGTTTAACAAAGCGATGATTGAAGCCGGTCATCAAG 841
.||||||||.|||||||||||.|||||||||||||.||||||..|||||.
BL00033___ytg 792 CATTGATACGAATACGTTTAATAAAGCGATGATTGCAGCCGGCTATCAAA 841
BSNT_04377___ 842 CCATCAGCCAGGACATGCTTGCGATTCTAACCCTGTATGTTCAGAAGCTC 891
.||||||||||||..||.|.|||||..|.||.|||||.||.|..|||||.
BL00033___ytg 842 ACATCAGCCAGGATTTGATGGCGATCGTGACGCTGTACGTGCCAAAGCTT 891
BSNT_04377___ 892 GTGATGATCCCGGTTTCCCTAGCAACTGCTTTCGGACTGACATTAATTCC 941
||||||||.|||||.||.||.||.||.||.|||||.||||||||.|||||
BL00033___ytg 892 GTGATGATTCCGGTATCTCTCGCGACGGCATTCGGGCTGACATTGATTCC 941
BSNT_04377___ 942 AACGATTACTGAATCGTTTACAAGCGGAAA-------CTATAAGCTGTTA 984
..||.|.||||||...|||||.|.| ||| || ||| |||
BL00033___ytg 942 GGCGGTGACTGAAAACTTTACCAAC--AAAGATTTCCCT----GCT-TTA 984
BSNT_04377___ 985 AATCAGCAGATTAATCAAACGATGCAGACGATCCTGTTTTTAATTATTCC 1034
||..|.||||||.||||..|||||||||..||.||.||..|..||.||||
BL00033___ytg 985 AACAAACAGATTGATCAGGCGATGCAGATCATTCTCTTCATCGTTCTTCC 1034
BSNT_04377___ 1035 GGCTGTTGTCGGGATCTCTCTATTGTCAGGACCGACGTATACGTTCTTTT 1084
|||....|||||.||..||||.|||||.||.|||...||.||||||||||
BL00033___ytg 1035 GGCATCAGTCGGTATGGCTCTTTTGTCGGGGCCGGTTTACACGTTCTTTT 1084
BSNT_04377___ 1085 ACGGGTCAGAGAGCCTTCACCCTGAACTGGGGGCAAACATTTTGCTATGG 1134
||||.||.||.|||||.|.|||||||.||||...|.|.||||||.|.|||
BL00033___ytg 1085 ACGGCTCGGAAAGCCTGCTCCCTGAAATGGGACGAGATATTTTGTTCTGG 1134
BSNT_04377___ 1135 TATTCGCCAGTCGCGATTTTGTTCTCTTTGTTTACAGTCAACGCAGCCAT 1184
||..||||.||.|||.|.||.|||||..|.||.||.||||||||.||.||
BL00033___ytg 1135 TACGCGCCTGTGGCGCTGTTATTCTCGCTCTTCACCGTCAACGCTGCAAT 1184
BSNT_04377___ 1185 TCTGCAGGGCATCAATAAGCAAAAATTTGCGGTTGTCAGCCTTG-TGATC 1233
|.|||||||..|.||.|||||.||||||||||||||||| |||| |||||
BL00033___ytg 1185 TTTGCAGGGGGTGAACAAGCAGAAATTTGCGGTTGTCAG-CTTGATGATC 1233
BSNT_04377___ 1234 GGTGTCGTGATCAAGCTTGTGCTGAATGTTCCGCTGATCAAGCTGATGC- 1282
||..|.||||||||..|.|.|||.||.||||||||.|||||||||.|.|
BL00033___ytg 1234 GGGATTGTGATCAAAATCGCGCTTAACGTTCCGCTCATCAAGCTGCTTCA 1283
BSNT_04377___ 1283 AGGCTGACGGAGCGATTTTAGCGACGGCGCTTGGATATATC-GCTTCCCT 1331
||||.| |||..|||||||.||.||||||||.||.||| || |||||.||
BL00033___ytg 1284 AGGCAG-CGGGTCGATTTTGGCAACGGCGCTCGGCTAT-TCAGCTTCACT 1331
BSNT_04377___ 1332 TTTATATGGGTTTATCATGATTAAGCGCCATGCAGGCTATTCGTATAAGA 1381
..||||.||.||||||||||||||.||||||||.||||||||||||...|
BL00033___ytg 1332 CCTATACGGATTTATCATGATTAAACGCCATGCCGGCTATTCGTATCGCA 1381
BSNT_04377___ 1382 TACTAGTTAAACGAACTGTTT----TGATGCTTGTATTATCAGCCATTAT 1427
.|||..||||||| |||| |||||||..|..|..|.||..|.||
BL00033___ytg 1382 AACTGTTTAAACG----GTTTTTGCTGATGCTGATCCTGACGGCGGTCAT 1427
BSNT_04377___ 1428 GGG-----TATTGCCGTGAAAATCGTGCAG-------TGGGTATTAGGCT 1465
||| |.||||.| .|.||.||| |..|||||
BL00033___ytg 1428 GGGCATCATTTTGCTG-----CTTGTCCAGGCGCTTCTAAGTATT----- 1467
BSNT_04377___ 1466 TCTTTATTTCCTATCAGGATGGCCAGCTGCAAG-CTGCGATTGTTGTGGT 1514
||||||||.||..|.|..||.|||.| ||.| ||||..|.||..|..|
BL00033___ytg 1468 --TTTATTTCATACGAAGGCGGGCAGAT-CAGGTCTGCTGTCGTCATTTT 1514
BSNT_04377___ 1515 GATCGCGGCCGCTGTTGGCGGAGCTGTCTACCTGTA-TTGCGGC-TACCG 1562
.|||.|..||||.||.|||||..|.||.||.||||| || ||| |||||
BL00033___ytg 1515 CATCACAACCGCAGTGGGCGGGTCAGTTTATCTGTACTT--GGCTTACCG 1562
BSNT_04377___ 1563 ATTAGGATTTTTACAGAAAATTTTAGGCCGCCGTTTGCCAGGTTTCTT-- 1610
..|...|.|..|..|.|||||.||.||.|..||.|||....|.||.||
BL00033___ytg 1563 TGTGAAACTGCTCGAAAAAATCTTCGGTCAGCGATTGAATCGCTTTTTCA 1612
BSNT_04377___ 1611 AAGGAAAGGC------AGACATGCAGGCTGA 1635
||.||||||| |
BL00033___ytg 1613 AAAGAAAGGCCTCCTAA-------------- 1629
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