Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04383 and BL00028
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04383.1.5803.seq
# -bsequence dna-align/BL00028___yteU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04383-BL00028___yteU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04383-BL00028___yteU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04383
# 2: BL00028___yteU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity: 358/680 (52.6%)
# Similarity: 358/680 (52.6%)
# Gaps: 202/680 (29.7%)
# Score: 1023.0
#
#
#=======================================
BSNT_04383 0 -------------------------------------------------- 0
BL00028___yte 1 ATGGAACAAAACGTCTCCATGGGAAGGGTGCTGAGCTTTTGTGAATGGGT 50
BSNT_04383 0 -------------------------------------------------- 0
BL00028___yte 51 GCTGAAGTTTTTTTACGCCAATCTGCTGTGGTTTGTTTTTACTATGCTCG 100
BSNT_04383 1 ---GTGGCGCTC----GGT------------------------------T 13
.||||| || ||| |
BL00028___yte 101 GCCTTGGCG-TCTTCGGGTTTATGCCGGCGACGACTGCATTGTTTTCAGT 149
BSNT_04383 14 GCCGAAAAGAAGCCGA----GGACAA---CG---TTCCGGTGCTCAAAAC 53
|.|||.||.|.| || ||.||| || |||||.|..|||||||
BL00028___yte 150 GACGAGAAAATG--GATCATGGGCAAAACCGATATTCCGATATTCAAAAC 197
BSNT_04383 54 GTTTTGGCAGGAATATAAGGGTGAATTTTTTCGTTCAA-----ATCTG-C 97
|||.|||||||..||....||.||.|||||||||||.| |||.| |
BL00028___yte 198 GTTCTGGCAGGCGTACCGCGGCGAGTTTTTTCGTTCCAACGCCATCGGTC 247
BSNT_04383 98 TCGGCGCTGTACTGGC----GCTCATCGGAGTGATCATTTATATTGATTT 143
|| .|.||||| || |||..|.|||||||||.|.|||.|
BL00028___yte 248 TC------ATTCTGGCGGCGGC----CGGCATCATCATTTATGTAGATCT 287
BSNT_04383 144 GGCCTTCATTTATCCAAGTCATTCCCTTCTGCACATCCTGCGCTTCGCCA 193
.||.||.||||||||...||||..|||..|||||.|.||.||.||||.||
BL00028___yte 288 TGCTTTTATTTATCCGGATCATCTCCTATTGCACGTTCTCCGGTTCGTCA 337
BSNT_04383 194 TTATGATATTTGGCTTTTTGTTCGT-ATCCATGCTTTTTTATGTGTTTCC 242
|||||.|.|||||.||||||||..| || ||||||.||||||.||||.||
BL00028___yte 338 TTATGGTTTTTGGATTTTTGTTTTTGAT-CATGCTGTTTTATATGTTCCC 386
BSNT_04383 243 GCTGCTTGTCCATTTTGACTGGAAAAAACGTCTGTATGTGAAATTTTCGC 292
||||||.|.||||||.||.|||||.||.||..|||||.|.||.|||||||
BL00028___yte 387 GCTGCTCGCCCATTTCGATTGGAAGAAGCGAATGTATTTCAAGTTTTCGC 436
BSNT_04383 293 TCTTGCTCAGTGTGGCGTATTTGCAATATACGTTTGCTATGCTTGCGCTG 342
|..|.||..|..|..||||||||||.|||||.||..|.|||.|.|||.|.
BL00028___yte 437 TGATTCTGGGCATATCGTATTTGCAGTATACATTAACGATGATGGCGGTC 486
BSNT_04383 343 ACTG--TTGCTCTTTTTTTCTTGCTTGCGTACCTGCCGGACATTGTCCCT 390
|||| .||||.|.|.|..||| ||||||..|||||.|..||.||.|||
BL00028___yte 487 ACTGCAATGCTTTATATCGCTT--TTGCGTTTCTGCCCGGGATCGTTCCT 534
BSNT_04383 391 TTTTTCAGCGTCAGCCTTATCAGCTA--CTGTCATATGCGCATTGTTTAT 438
||||||||.|.|||.||..|.||.|| |.|| ||||.|..|.|..|||
BL00028___yte 535 TTTTTCAGTGCCAGTCTGCTTAGTTATGCGGT--TATGTGGCTGGCATAT 582
BSNT_04383 439 GCCGTGCTGCTGAAAGTGG-AGCAGCAAGGCGGCGAGCCACAGAGGGAAT 487
...|||.||...||||.|| |||.||| || |||||.||||.
BL00028___yte 583 CAAGTGTTGAAAAAAGCGGAAGCCGCA-------GA---ACAGAAGGAAA 622
BSNT_04383 488 CC--CATATACGGAAAG-----CTTTTTAA 510
|| |||| |||..||| | ||||
BL00028___yte 623 CCGTCATA-ACGACAAGACACAC---TTAA 648
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