Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04387 and BL00025
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04387.1.5803.seq
# -bsequence dna-align/BL00025___yteS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04387-BL00025___yteS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04387-BL00025___yteS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04387
# 2: BL00025___yteS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 566
# Identity: 273/566 (48.2%)
# Similarity: 273/566 (48.2%)
# Gaps: 214/566 (37.8%)
# Score: 747.0
#
#
#=======================================
BSNT_04387 0 -------------------------------------------------- 0
BL00025___yte 1 GTGAAAAACTTCGCTTTCTCCGTCCTTCTAATAGCAGCAGTGCTTCTTCT 50
BSNT_04387 1 ------ATGC-------ATG---------------------TCATTCTCT 16
|||| ||| |.||| |
BL00025___yte 51 TACCTCATGCGGAAAGGATGGTAGCCGGGGAACAGACGTATTGATT---T 97
BSNT_04387 17 TTTCTGATATGCA--GGCTGGCGTACAGGAAAAAATAAAAAAGGCCGCCG 64
||||.| ||||| |||||..|||.||||||| ||
BL00025___yte 98 TTTCGG--ATGCACCGGCTGAAGTAAAGGAAAA---------------CG 130
BSNT_04387 65 AGCAG---AATGCCGGGA------AGATCGATATC-----TTTCC----- 95
.|||| ..||.||||| ||.||.|.||| |||||
BL00025___yte 131 TGCAGCGCGCTGTCGGGAAAGAACAGCTCAACATCACCGTTTTCCCGGCA 180
BSNT_04387 96 AGCTTTTCAGGAAAAACTGCTGACTGAAATTACCGCCCATGAGGGAGATG 145
|.| |.|||||||||.||...|||||||.|.||..|.||.||||||.
BL00025___yte 181 ACC----CCGGAAAAACTCCTTGTTGAAATTGCGGCGAAAGAAGGAGATC 226
BSNT_04387 146 TTTTCATCGTGCCTGAAGACATGTTTCAAGCTTACGATGATCCGGAAAAT 195
|.||.|||||.||.||||||||||||.||.|||...|.|||||.|||...
BL00025___yte 227 TGTTTATCGTTCCAGAAGACATGTTTAAACCTTTTTACGATCCTGAAGGA 276
BSNT_04387 196 TTTCAGCCGTTAAACGGATTGCCTCCTAAAAAAACATCTCCTTATACAAC 245
.|||||||.||.||.| .|||.||..||.|||| |.|.|
BL00025___yte 277 CTTCAGCCATTGAATG--CTGCTTCGGAAGAAAA-----------AGAGC 313
BSNT_04387 246 TGTTAATAAAAAAACAG------GAGAAAAAAC-----------GATCTA 278
.|| |||| |.|.|||||| |.|.||
BL00025___yte 314 CGT----------ACAGCGCTCCGGGCAAAAACGGGGAAGTACAGCTGTA 353
BSNT_04387 279 TGCCGTTCAGATCGAAAAAGGGAAAAAACGGCTGAACGGCTATTCTTTTC 328
|||.|.|...|||||||||||..|||||||..|||||||||||.|..|||
BL00025___yte 354 TGCGGCTGTCATCGAAAAAGGAGAAAAACGTTTGAACGGCTATACGGTTC 403
BSNT_04387 329 GATTGAATCGCA-ATATGGCGGCGTTTATTCCTGTGTATGCTGAA-AAAA 376
..|||||| .|| |||||||.||.||.||.||.||.||||| ||| ||||
BL00025___yte 404 AGTTGAAT-ACAGATATGGCAGCTTTCATACCGGTTTATGC-GAAGAAAA 451
BSNT_04387 377 C------AGAG------------GAAGCGCTGCAGCTGATTTCTCAA-CT 407
| ||.| |||||||| |||| |.
BL00025___yte 452 CCCCTGAAGCGACGGAACTCATCGAAGCGCT------------TCAAGCA 489
BSNT_04387 408 AACTGAAGCCCGATAG 423
||.|||
BL00025___yte 490 AAATGA---------- 495
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