Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04388 and BL00024
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04388___yteR.1.5803.seq
# -bsequence dna-align/BL00024___yteR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04388___yteR-BL00024___yteR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04388___yteR-BL00024___yteR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04388___yteR
# 2: BL00024___yteR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1201
# Identity: 796/1201 (66.3%)
# Similarity: 796/1201 (66.3%)
# Gaps: 167/1201 (13.9%)
# Score: 2443.5
#
#
#=======================================
BSNT_04388___ 1 ATGGATCAATC---AATCGCTGTAAAATCGCCTCTTACGTAC---GCGGA 44
|||.||||||| .|||.| ||||||||||||| ||| ||.||
BL00024___yte 1 ATGAATCAATCTCTCATCAC---AAAATCGCCTCTT---TACATTGCTGA 44
BSNT_04388___ 45 GGCATTGGCAAAAACCATTATGAATACGTACACAGTCG-AGGAGCTGCCT 93
.|.|..|||.|||||.||.|||||..||||.||| .|| |.||||||||.
BL00024___yte 45 AGAAGCGGCCAAAACAATAATGAAAGCGTATACA-CCGAAAGAGCTGCCA 93
BSNT_04388___ 94 CCTGCAAACCGCTGGCACTACCATCAGGGTGT-TTTCTTATGCGG--TGT 140
||.||....||||||||||||||||||||.|| |||| |.||||| ||
BL00024___yte 94 CCGGCCGGGCGCTGGCACTACCATCAGGGCGTATTTC-TGTGCGGCCTG- 141
BSNT_04388___ 141 ATTGCGGCTGTGGGAAGCAACCGGGGAA--AAGCGGTATTTTGAGTATGC 188
||| ||.||.||||||| ||.||||||| |||| .||.||..|.||||.
BL00024___yte 142 ATT-CGCCTTTGGGAAG-AAACGGGGAAAGAAGC-ATACTTCAAATATGT 188
BSNT_04388___ 189 GAAGGCCTATGC---AGATCTCTTAATCGATGATTATGGCAATCTATTAT 235
.||.|..||||| .|||||| ||||||||.|..|||||| |.||||
BL00024___yte 189 AAAAGAATATGCCGATGATCTC---ATCGATGACTGCGGCAAT-TTTTAT 234
BSNT_04388___ 236 TT-AGAAGAGATGAACTGGACGCCATTCAAGCTGGTCTCATTCTTTTTCC 284
|| ||.||.|||||.||||||||.||.|||||.||.||..|.||||.|||
BL00024___yte 235 TTCAGGAGGGATGAGCTGGACGCTATACAAGCCGGACTTCTCCTTTATCC 284
BSNT_04388___ 285 ATTATACGAGCAGACGAAGGATGAACGGTATGTCAAAGCGGCAAAAAGGC 334
.||.||||||.|||||...||||||||.||...||||||.|||||||.||
BL00024___yte 285 TTTGTACGAGGAGACGGGCGATGAACGCTACCGCAAAGCTGCAAAAAAGC 334
BSNT_04388___ 335 TGCGCGGCTTATATAGAACACTGAACCGGACGTCTGAGGGCGGTTTTTGG 384
||.|.|||.|.|.|..|||.|||||.|..||....||.||||||||||||
BL00024___yte 335 TGAGGGGCCTTTTTGAAACGCTGAATCAAACAGAAGAAGGCGGTTTTTGG 384
BSNT_04388___ 385 CACAAAGACGGTTATCCATACCAAATGTGGCTTGACGGCTTATACATGGG 434
||.|||||....||.||.||||||||||||||||||||.||.||||||||
BL00024___yte 385 CATAAAGATAAATACCCTTACCAAATGTGGCTTGACGGGTTGTACATGGG 434
BSNT_04388___ 435 GGGGCCGTTCGCACTGAAATATGC---------CAATCTGAAGCAGGAGC 475
.|||||.||||||||.||.||||| |||| ||||
BL00024___yte 435 AGGGCCTTTCGCACTCAAGTATGCAAGGGCGTTCAAT---------GAGC 475
BSNT_04388___ 476 CGGAGCTGTTTGATCAGGTCGTGCTGCAGGAGTCATTGATGAGAAAGCAT 525
|.||.||.|..|||.|||||.|.||..||||...|.|.||||||||||||
BL00024___yte 476 CTGAACTTTACGATAAGGTCATCCTCGAGGAAAAACTAATGAGAAAGCAT 525
BSNT_04388___ 526 ACGAAGGA-TGCAAAAACCGGACTCTTTTATCACGCCTGGGATGAAGCGA 574
|||||.|| ||| |..||.|||.|.|.|||||||||.|||||||||..||
BL00024___yte 526 ACGAAAGACTGC-AGGACGGGATTATATTATCACGCGTGGGATGAAAAGA 574
BSNT_04388___ 575 AAAAAATGCCTTGGGCCAATGAAGAGA--------CAGGCTGTTCTCCGG 616
...|.|||||||||||| || |||||||||||||.|
BL00024___yte 575 GGCAGATGCCTTGGGCC--------GACCCCGTCTCAGGCTGTTCTCCAG 616
BSNT_04388___ 617 AATTCTGGGCGCGTTCCATCGGGTGGTACGTCATGTCTCTTGC------T 660
||||.||||...|.||.|||||.||||||| |.||||| .
BL00024___yte 617 AATTTTGGGGAAGGTCAATCGGCTGGTACG------CGCTTGCACTGAGC 660
BSNT_04388___ 661 GACATGATTGAAGAGCTGCCGAAGAAGCAT---CCAAACCGTCATGTGTG 707
||||||||.|||..|||.|||.||..|||| .||| |.||.|.|||
BL00024___yte 661 GACATGATCGAACTGCTCCCGCAGGGGCATAGCACAA---GACAGGAGTG 707
BSNT_04388___ 708 GAAAAAC----ACGCTGCGGGACATGATTAAAAGCATCTGCCG-CTATCA 752
| || |||||.|..||.|||.|.|||||||| |||.| .|.|||
BL00024___yte 708 G----ACCCGGACGCTTCAAGAGATGGTCAAAAGCAT-TGCTGATTTTCA 752
BSNT_04388___ 753 AGA-CAAAGAGACGGGGTTATGGTATCAGATCGTTGAT-AAGGGAGACAG 800
||| .|||| .||.|||.|||||.|.|||.|.||.||| ||||..|||
BL00024___yte 753 AGATGAAAG-CACAGGGCTATGGCACCAGGTTGTCGATAAAGGCGGAC-- 799
BSNT_04388___ 801 GTCC-GATAACTGGCTGGAAAGCTCAGGATCCTGCCTGTACATGTACGCA 849
.||| ||.||.|||||.||||||||..|.||.||..||||.||||||||.
BL00024___yte 800 TTCCGGACAATTGGCTCGAAAGCTCCTGCTCGTGTTTGTATATGTACGCG 849
BSNT_04388___ 850 CTTG-CGAAGGGAATCAATCA-AGGCTATCTAGACAGAGCTTACGAAACA 897
.|.| |.|||||..|| .|| .||||||.|.|| || ||
BL00024___yte 850 ATGGCCAAAGGGGCTC--GCATGGGCTATATTGA------TT------CA 885
BSNT_04388___ 898 ACACTACTA-----AAAGCGTATCAAGGCTT------GATTC-----AGC 931
.|| || || |.|||| |..||||||| ||.|| ||
BL00024___yte 886 TCA-TA-TATTGATAGAGCG-ACAAAGGCTTTCAAAGGACTCGTCGAAG- 931
BSNT_04388___ 932 ATAAAACCGAAA------CATCAGAAGACGGAGCGTTTCTCGTCAAAGAC 975
|.||||.|||.| ||..|||||.| ||.||..|.|||||.
BL00024___yte 932 AAAAAATCGAGATGAGCGCAAAAGAAGGC------TTGCTTTTAAAAGAT 975
BSNT_04388___ 976 ATATGTGTCGGAACGTCAGCCGGTTTCTATGACTATTATGTCAGCCGCGA 1025
||.||.||||||||.||.||.||....||.||.|||||||||.|.||.||
BL00024___yte 976 ATCTGCGTCGGAACTTCTGCAGGGACATACGATTATTATGTCGGACGGGA 1025
BSNT_04388___ 1026 AAGAAGCACAAACGATCTGCACGGAGCCGGCGCGTTTATTTTAGCTATGA 1075
||.||||||.||||||||.|||||.|.||||||.||..||.|.|||.|..
BL00024___yte 1026 AAAAAGCACCAACGATCTTCACGGTGTCGGCGCCTTGGTTATGGCTTTTG 1075
BSNT_04388___ 1076 CAGAGCTGGA--------GCCTCTTTTTAGGTCAGCCGGGAAATGA---- 1113
.|||.||.|| |||..|||| .|.||.|||||..||
BL00024___yte 1076 TAGAACTTGAAAAGACCGGCCGTTTTT----CCTGCGGGGAAGCGAAGTG 1121
BSNT_04388___ 1113 - 1113
BL00024___yte 1122 A 1122
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