Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00867 and BL00018
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00867.1.5803.seq
# -bsequence dna-align/BL00018___yecA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00867-BL00018___yecA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00867-BL00018___yecA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00867
# 2: BL00018___yecA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1441
# Identity: 774/1441 (53.7%)
# Similarity: 774/1441 (53.7%)
# Gaps: 371/1441 (25.7%)
# Score: 1683.5
#
#
#=======================================
BSNT_00867 1 GTGAGAGAAAAAAAACTTGGCCCCGTACTTTTAAGTGGATTAATTGTTGG 50
.|||||||||||||.|||||.||..||.|.|||||.||..|.||....||
BL00018___yec 1 ATGAGAGAAAAAAAGCTTGGTCCTTTATTGTTAAGCGGGCTGATGACGGG 50
BSNT_00867 51 TCCTATTTTGGGATCGGGAATTATTTTGCTTCCACCAATAATTTATGGTA 100
.||.|||||.|||||.|||||.|||.||||.||.||.||.|||.| |.
BL00018___yec 51 GCCCATTTTAGGATCCGGAATCATTCTGCTGCCTCCGATGATTCA---TC 97
BSNT_00867 101 AGA---CTGGGGATTATGCCATATTAGCATGGTTTATTATGATGATCATT 147
||| ||||.||.||.||.||.||.||.|||.|..|.|||.||...||.
BL00018___yec 98 AGACAGCTGGAGACTACGCGATTTTTGCGTGGCTGTTGATGCTGGGAATC 147
BSNT_00867 148 AGTTTTCTATTTGCTTCATTGTTTGGAAAATTAAGTGT--TTTATTCCCG 195
.|||||.|||||||.|...|.||||..|.||||||.|| ..||| |||
BL00018___yec 148 GGTTTTTTATTTGCCTGGGTTTTTGCCAGATTAAGCGTCGAGTAT--CCG 195
BSNT_00867 196 AATGAATCTGGTGTTGCACATACAGTTGAACTTGCATTTGGACAACATAT 245
|||||..|.||..||||..||.|.|.||||...||.||.||....|.|.|
BL00018___yec 196 AATGATGCCGGGATTGCTTATGCGGCTGAAAAAGCGTTCGGGTCGCGTGT 245
BSNT_00867 246 AAAACAATTAACTT--CTGTATTTTTTATTAT------TGCGGGCAGTGT 287
.||| ||.|| |.||.||||.|.|||| ||||.|| |
BL00018___yec 246 TAAA-----AAGTTGGCAGTCTTTTATTTTATCATGGCTGCGAGC----T 286
BSNT_00867 288 T-GGACCAGTAGCCGTTCTAATGACAGCCAGTCAATACCTCAAGGCTTTG 336
| ||.||.|..|||||..|||||||.|||.|..|||| |.
BL00018___yec 287 TCGGCCCCGCCGCCGTATTAATGACGGCCGGCGAATA-----------TA 325
BSNT_00867 337 TTCAAAAGTAATGGTTGGTCCCTAGAGACATATGGAA--TCATTCTAATG 384
|||| .||.||.|.|.|| ||.| .||||| ..||
BL00018___yec 326 TTCA-------------TTCTCTTGCGGCA---GGCACGGCATTC-CCTG 358
BSNT_00867 385 ATGA----------TTTGTTTATTCGTTCTAT--TATCGAATATC----- 417
.||| |||||||.||...|||.| ||| |..||||
BL00018___yec 359 CTGAACTGTACGGCTTTGTTTTTTTCATCTTTTGTAT-GGTTATCCTTTG 407
BSNT_00867 418 ------TCTTCC----GTAGGAAAAGTGTCATTTATGTTTTCCACAGTCT 457
||||.| ||.||.|..||..||.|.||.||||||||.|.|.
BL00018___yec 408 CTTTAATCTTTCATTTGTCGGCATGGTTGCACTCATTTTTTCCACTGCCG 457
BSNT_00867 458 CCACAGTAGTAT--TGTTAAGTGGAGGGATTAGTTCA------ATTCC-- 497
|..|..| ||| |||| ||||.| || .||||
BL00018___yec 458 CGGCGCT--TATCCTGTT---TGGAAG--------CAGCGCGGCTTCCGT 494
BSNT_00867 498 -CTTTA------TGAGGGATAAAGCTTTTATTAAAAC--ACCATTTCATC 538
|.||| |||||| ||.|.|..| |.|| |.|||||||..
BL00018___yec 495 GCCTTACTTCCGTGAGGG-----GCCTCTCGT-AGACGGAACATTTCAGT 538
BSNT_00867 539 TTGATGATTTTGGTTATA----GTATT-CTTTTGCTTTTTTGGGCTCTAG 583
||...|||||||| |.||| ||..|.||.||.|||||..|.|
BL00018___yec 539 TTACCGATTTTGG-----CCGCGGATTGCTGCTCCTGTTCTGGGCATTGG 583
BSNT_00867 584 TAGGTTGGGAAATTATAGGTAATTATAGTTTGGATGTCAAAAAC----AG 629
|.||.||||||||..|.||.||.||.||..||||.||.|||||| .|
BL00018___yec 584 TCGGATGGGAAATCGTCGGCAACTACAGCATGGAAGTGAAAAACCGCGGG 633
BSNT_00867 630 AAAAAGAACGATTCCCCAAGCAATAGTAATAAGCTCAGTGGTCATCAC-- 677
|| |||||||||.|..||..|.||.||.|| ||| |.|.||
BL00018___yec 634 AA----AACGATTCCACGGGCTGTCGTGATCAG--CAG----CCTGACGG 673
BSNT_00867 678 -AACGGT-TTGTATT--------GTTGTAGCTGCTGCCTATCAATGGATT 717
|||||| .|.|||| |..|.||||| .|||.||||||
BL00018___yec 674 TAACGGTCATATATTTGGCGACCGCGGCAGCTG------TTCAGTGGATT 717
BSNT_00867 718 GAT------TTACATCACACAC--ACACATTAA------CGATTATTTTA 753
||| || |..|.||.|| ||| |||.| ||||.||..|.
BL00018___yec 718 GATCCTGGATT-CTCCGCAAACGGACA-ATTGAAGCTGGCGATGATGCTG 765
BSNT_00867 754 ATTCCATTGCTTGGAACGTCGTTTGC-TTCCC------CGACAATG---- 792
|..||.|||.|.||| ||.||||| ||.|| || ||.||
BL00018___yec 766 ACGCCGTTGTTCGGA---TCTTTTGCATTGCCGGTGATCG-CAGTGCTCA 811
BSNT_00867 793 --GCTTTCATCACAACAATATTATGTATGAGCACATATTTATTGGTTACT 840
|||.||.|| ||||||.|..|.|||||...|||.||.
BL00018___yec 812 CCGCTGTCCTC------------TGTATGTGTGCTTATTTTCAGGTGACA 849
BSNT_00867 841 GGTGGAGTATCACGTCTAATAGCCTCAGAGAATAAAAAAATAACC----- 885
||.||||.|.|..|.||..|.|||||..|| .||
BL00018___yec 850 GGCGGAGCAGCCAGGCTGGTGGCCTCGCAG------------GCCGGCGG 887
BSNT_00867 886 -TTGATTTCTTACCGCTC-----CAAAACAAACATACCAATTGGAGCCAT 929
.||.||.|.|||.|.|| .|||.|| .||.|.||.|||
BL00018___yec 888 GCTGTTTGCCTACAGATCAAGGGGAAATCA-----GCCGACTGCAGC--- 929
BSNT_00867 930 AAGC--------ATATTAACATTAGT-TCATGCA----ATCGTTTT---- 962
|| ||||| | ||||.|| ||||||||
BL00018___yec 930 --GCTGGGGCTTATATT--------TCTCATCCATACGATCGTTTTCGTC 969
BSNT_00867 963 ----TATTCTTTTATTTATAAACATCATTAATGTTGA-ACAAATTGTTGG 1007
|..|.|||.|.|| || |||||||||| || |.|||
BL00018___yec 970 TGCCTGATGTTTCACTT-------TC-TTAATGTTGAGAC-----GCTGG 1006
BSNT_00867 1008 ----AATGGCTAATGCTTTCTTTATTAGTAATGCAA-----TTTGCGGTA 1048
.||.||.||.||.||.||.|| .||||| |.||||||.
BL00018___yec 1007 TTCTGATCGCAAACGCCTTTTTCAT-----CTGCAACTCGCTGTGCGGTC 1051
BSNT_00867 1049 TTTTGTCTGCATATAAACTGTTACCTGGTAAG------TTTTC-AAAAAG 1091
||....|.||.||.||.|||||| |.|| |||.| ||||||
BL00018___yec 1052 TTGCCGCAGCTTACAAGCTGTTA-----TCAGGCCGCATTTACAAAAAAG 1096
BSNT_00867 1092 TTTATCATTAATG-CTTATTATCA------GCTTTTTGATTATCCTTTCT 1134
| ||| ||..||.||| ||||...|.|..|.||||..
BL00018___yec 1097 T---------ATGCCTCTTTCTCATGGGGGGCTTCACGCTGCTTCTTTTG 1137
BSNT_00867 1135 TTCTCATCAATATGGATTTTA----TTA--ATGATTGCCCTTATAAC--- 1175
||.||||||...|||.|.||| ||| |||.||||| |.|
BL00018___yec 1138 TTTTCATCATCGTGGGTATTACTGTTTATCATGCTTGCC-----AGCGCA 1182
BSNT_00867 1176 TACTTTCTATTTGA---TCCGACACTTT---ATCTGGATACGTCAATTAA 1219
|..|||.| |.||| ||||.||..|| |||||||.| ||
BL00018___yec 1183 TTGTTTGT-TGTGAACTTCCGCCAACTTAACATCTGGAAA--------AA 1223
BSNT_00867 1220 AGAAATCCGCTACTAATTCTCAAGACAAATTGCGATTTTAA 1260
.|.||..||| .|| || |||||.| |.||||
BL00018___yec 1224 GGTAAAACGC-CCT--TT-------CAAATCG---TATTAA 1251
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