Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04417 and BL00016
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_04417___leuS.1.5803.seq
# -bsequence dna-align/BL00016___leuS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04417___leuS-BL00016___leuS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04417___leuS-BL00016___leuS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04417___leuS
# 2: BL00016___leuS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2432
# Identity: 1944/2432 (79.9%)
# Similarity: 1944/2432 (79.9%)
# Gaps: 34/2432 ( 1.4%)
# Score: 7640.0
#
#
#=======================================
BSNT_04417___ 1 TTGAGTTTTCAGCA-CAAAGAGATAGAAAAGAAATGGCA-AACATATTGG 48
|||||.|||.|.|| ||||.| ||.||.||.||.||||| .|| ||||||
BL00016___leu 1 TTGAGCTTTGACCATCAAACA-ATCGAGAAAAAGTGGCAGGAC-TATTGG 48
BSNT_04417___ 49 CTTGAAAACAAAACATTTGCCACTCTTGATAATAATGAAAAACAAAAATT 98
||..||||.|||||.||||||||||.|||..||||....||||..|||||
BL00016___leu 49 CTGAAAAATAAAACGTTTGCCACTCGTGAAGATAAATCCAAACCTAAATT 98
BSNT_04417___ 99 CTACGCGCTGGACATGTTTCCTTACCCGTCTGGAGCTGGGTTGCACGTCG 148
.||.||..|||||||||||||.||.|||||.||.||.||..|.|||||||
BL00016___leu 99 TTATGCATTGGACATGTTTCCGTATCCGTCGGGCGCAGGCCTTCACGTCG 148
BSNT_04417___ 149 GCCATCCTGAAGGATACACAGCTACGGATATTCTGTCCCGCATGAAGCGC 198
|.||.||||||||.||.|||||.||.||.|||.|||||||||||||.||.
BL00016___leu 149 GACACCCTGAAGGCTATACAGCAACTGACATTTTGTCCCGCATGAAACGG 198
BSNT_04417___ 199 ATGCAGGGCTATGATGTCCTTCATCCAATGGGCTGGGACGCATTCGGCCT 248
|||||.||.||..|||||||.|||||.|||||||||||.||||||||.||
BL00016___leu 199 ATGCAAGGGTACAATGTCCTCCATCCGATGGGCTGGGATGCATTCGGGCT 248
BSNT_04417___ 249 GCCAGCTGAACAATACGCGCTTGACACAGGGAACGACCCCGCTGTGTTTA 298
.||.||.||.|||||.|||||.||.||.||.|||||.||.||.||.||.|
BL00016___leu 249 TCCTGCCGAGCAATATGCGCTAGATACGGGAAACGATCCTGCCGTCTTCA 298
BSNT_04417___ 299 CGAAGCAGAATATTGATAACTTCCGCCGCCAAATTCA-AGCGCTTGGCTT 347
|..|||||||.|||||.||||||||||||||.| ||| ||||||.|||||
BL00016___leu 299 CCGAGCAGAACATTGACAACTTCCGCCGCCAGA-TCAGAGCGCTCGGCTT 347
BSNT_04417___ 348 CTCATATGACTGGGATCGCGAAATCAATACGACTGACCCTGAATACTATA 397
.||.|||||.|||||..|.|||.||||.||.||.||.||.||.|||||||
BL00016___leu 348 TTCGTATGATTGGGACAGAGAAGTCAACACAACAGATCCGGACTACTATA 397
BSNT_04417___ 398 AATGGACGCAATGGATTTTCTTAAAGCTATACGAAAAAGGCCTTGCTTAC 447
||||||||||.|||||||||||||||||.|||||||||||.||.|||||.
BL00016___leu 398 AATGGACGCAGTGGATTTTCTTAAAGCTTTACGAAAAAGGTCTCGCTTAT 447
BSNT_04417___ 448 GTTGACGAAGTGCCTGTAAACTGGTGCCCTGCGCTCGGTACTGTTCTTGC 497
||.||.||.||.||||||||||||||.||||||||.||.||.||||||||
BL00016___leu 448 GTAGATGAGGTCCCTGTAAACTGGTGTCCTGCGCTTGGAACCGTTCTTGC 497
BSNT_04417___ 498 CAACGAAGAAGTCATTGACGGCAAGAGCGAACGCGGCGGCCATCCGGTAG 547
|||.|||||||||||.||||||||.||||||||||||||.|||||.||||
BL00016___leu 498 CAATGAAGAAGTCATCGACGGCAAAAGCGAACGCGGCGGACATCCTGTAG 547
BSNT_04417___ 548 AGAGACGCCCAATGAAGCAGTGGATGCTGAAAATCACCGCTTATGCGGAC 597
|..|.||.||||||||||||||||||||||||||.|||||||||||.|||
BL00016___leu 548 AACGCCGTCCAATGAAGCAGTGGATGCTGAAAATTACCGCTTATGCCGAC 597
BSNT_04417___ 598 AGGCTCCTTGAGGACTTGGAAGAGCTTGATTGGCCGGAAAGCATTAAAGA 647
.|.||.|||||.|||.|||||||.||.||.||||||||||||||||||||
BL00016___leu 598 CGCCTGCTTGAAGACCTGGAAGAACTCGACTGGCCGGAAAGCATTAAAGA 647
BSNT_04417___ 648 TATGCAGCGCAACTGGATCGGCCGTTCGGAAGGCGCTCACGTTCATTTTG 697
.||||||||||||||||||||||||||.|||||.||.||.||||||||||
BL00016___leu 648 AATGCAGCGCAACTGGATCGGCCGTTCTGAAGGGGCGCATGTTCATTTTG 697
BSNT_04417___ 698 CTATAGATGG--ACATGATGATTCCTTTACGGTGTTTACAACAAGACCAG 745
|..|.||.|| .|| ||||..|.||||||||.||.||.||..|.||.|
BL00016___leu 698 CGGTCGACGGCACCA--ATGAAACGTTTACGGTTTTCACCACGCGGCCTG 745
BSNT_04417___ 746 ATACGCTGTTTGGCGCTACATACACTGTCCTTGCCCCGGAACACGCATTG 795
|.||..|.||.||.||.|||||..|.||.||.||.|||||.||.|..|||
BL00016___leu 746 ACACATTATTCGGTGCGACATATGCCGTGCTGGCTCCGGAGCATGATTTG 795
BSNT_04417___ 796 GTGGAAAACATCACAACGGCAGAGCAAAAAGAAGCTGTTGAAGCTTATAT 845
||..||||.|||||||||.|.||.||.|||||.||.||..|.||.|||||
BL00016___leu 796 GTTCAAAAAATCACAACGCCTGAACAGAAAGACGCAGTCAACGCCTATAT 845
BSNT_04417___ 846 CAAAGAAATTCAATCAAAGAGTGACCTAGAACGCACAGATCTTGCGAAAA 895
..|||||.|||||||||||||.|||.|.||.||.|||||.|||||.||||
BL00016___leu 846 TGAAGAAGTTCAATCAAAGAGCGACTTGGAGCGGACAGACCTTGCCAAAA 895
BSNT_04417___ 896 CAAAGACAGGCGTATTTACAGGAGCGTATGCGATCAATCCTGTAAACGGA 945
|||||||||||||.||.|||||.||.||||||.|.|||||.|.|||||||
BL00016___leu 896 CAAAGACAGGCGTCTTCACAGGTGCATATGCGGTTAATCCGGCAAACGGA 945
BSNT_04417___ 946 GAAAAACTGCCGATTTGGATTGCGGATTATGTTCTT-GCATCATACGGAA 994
||||||.|.|||.|.|||||||||||.|||| |||| ||..|||||||.|
BL00016___leu 946 GAAAAAATTCCGGTCTGGATTGCGGACTATG-TCTTGGCTACATACGGGA 994
BSNT_04417___ 995 CAGGTGCTGTCATGGCAGTTCCTGGACACGATGAGCGTGATTTTGAATTC 1044
|.||.||.||||||||.|||||||..||.||||||||.||...||||||.
BL00016___leu 995 CCGGGGCGGTCATGGCCGTTCCTGCCCATGATGAGCGGGACCATGAATTT 1044
BSNT_04417___ 1045 GCCAAAACATTCGGCCTTCCGGTGAAGGAAGTCGTAAAAGGCGGGAACGT 1094
||...|.|||||||.||.|||.|.||.||||||||.|||||||||.|.||
BL00016___leu 1045 GCATCAGCATTCGGGCTGCCGATCAAAGAAGTCGTCAAAGGCGGGGATGT 1094
BSNT_04417___ 1095 TGAGGAAGCAGCCTATACTGGCGACGGCGAGCACGTGAACTCTGATTTCC 1144
||||.|||.|||.|||||.|||||||||||.||..|..|.||.|||||.|
BL00016___leu 1095 TGAGAAAGAAGCATATACAGGCGACGGCGAACATATCCATTCAGATTTTC 1144
BSNT_04417___ 1145 TGAACGGCCTTCACAAACAGGAAGCGATTGAGAAAGTGATCGCTTGGCTG 1194
|||||||.|||.|.|||..||..|||||.||.|||.|||||...|||||.
BL00016___leu 1145 TGAACGGTCTTGATAAAGCGGCTGCGATCGAAAAAATGATCCAGTGGCTT 1194
BSNT_04417___ 1195 GAAG-AAACGAAAAACGGTGAGAAGAAAGTGACGTACCGTCTTCGTGACT 1243
||.| ||||| ..||.||.|||||.|||||.||.|||||.||.||.||||
BL00016___leu 1195 GAGGAAAACG-GGAAGGGCGAGAAAAAAGTAACATACCGCCTCCGCGACT 1243
BSNT_04417___ 1244 GGCTCTTCAGCCGCCAGCGTTATTGGGGCGAGCCGATTCCGGTCATTCAT 1293
||||.||||||||.|||||.||.||||||||||||||.|||.||||.|||
BL00016___leu 1244 GGCTGTTCAGCCGTCAGCGCTACTGGGGCGAGCCGATCCCGATCATCCAT 1293
BSNT_04417___ 1294 TGGGAAGACGGAACGTCAACAGCTGTCCCTGAAGAGGAGCTGCCGCTGAT 1343
|||||||||||.||.||.||..|.||.||||||||.||||||||||||||
BL00016___leu 1294 TGGGAAGACGGCACATCGACTCCGGTTCCTGAAGAAGAGCTGCCGCTGAT 1343
BSNT_04417___ 1344 TTTGCCGAAAACGGATGAAATCAAACCGAGCGGAACGGGCGAATCACCGC 1393
.||||||||||||...|||||||||||||||||||||||.||.||.||.|
BL00016___leu 1344 CTTGCCGAAAACGTCGGAAATCAAACCGAGCGGAACGGGTGAGTCCCCTC 1393
BSNT_04417___ 1394 TTGCGAACATTAAAGAGTGGGTGGAAGTCACAGACCCTGAGACAGGGAAA 1443
|||||||.||||||||.|||||||||||.|||||.|||||.|||||.|||
BL00016___leu 1394 TTGCGAATATTAAAGAATGGGTGGAAGTGACAGATCCTGAAACAGGCAAA 1443
BSNT_04417___ 1444 AAAGGAAGAAGAGAAACGAATACAATGCCGCAATGGGCGGGAAGCTGCTG 1493
||.||||||.|.|||||||||||.||||||||||||||||||||||||||
BL00016___leu 1444 AAGGGAAGACGCGAAACGAATACGATGCCGCAATGGGCGGGAAGCTGCTG 1493
BSNT_04417___ 1494 GTATTTCTTGCGCTATATTGATCCGCACAATCCGGATCAGCTGGCATCAC 1543
|||.|||.|||||||.|||||||||.|.||.|||.|..|||||||.||.|
BL00016___leu 1494 GTACTTCCTGCGCTACATTGATCCGAAGAACCCGAACGAGCTGGCTTCCC 1543
BSNT_04417___ 1544 CAGAAAAATTGGAAA--AATGGCTTCCGGTCGATATGTATATCGGCGGTG 1591
|.|||||||| ||| ||||||||||.|||||||||||||||||.||.|
BL00016___leu 1544 CTGAAAAATT--AAAGGAATGGCTTCCTGTCGATATGTATATCGGAGGGG 1591
BSNT_04417___ 1592 CAGAGCATGCCGTGCTTCACCTTCTGTATGCCCGCTTCTGGCATAAGTTC 1641
|.|||||.|||||.||||||.|..|||||||.||||||||||||||.|||
BL00016___leu 1592 CGGAGCACGCCGTTCTTCACTTATTGTATGCGCGCTTCTGGCATAAATTC 1641
BSNT_04417___ 1642 CTTTATGATATCGGCGTAGTGCCGACGAAAGAACCGTTCCAAAAGCTGTA 1691
||||||||.|||||.||.||.|||||||||||.||||||.||.||||.||
BL00016___leu 1642 CTTTATGACATCGGGGTCGTTCCGACGAAAGAGCCGTTCAAACAGCTTTA 1691
BSNT_04417___ 1692 CAACCAAGGAATGATTCTCGGTGAAAATAACGAAAAAATGAGTAAATCTA 1741
.||||||||.||||||||.||.|||||.||.|||||||||||.|||||.|
BL00016___leu 1692 TAACCAAGGGATGATTCTTGGCGAAAACAATGAAAAAATGAGCAAATCCA 1741
BSNT_04417___ 1742 AAGGGAACGTTGTCAACCCTGACGAAATCGTGGCCTCTCACGGTGCTGAT 1791
||||.||.||.|||||.||.||||||||.||||...|.||.||.||.||.
BL00016___leu 1742 AAGGCAATGTCGTCAATCCGGACGAAATTGTGGAGACGCATGGCGCGGAC 1791
BSNT_04417___ 1792 ACGCTGAGATTGTACGAAATGTTCATGGGACCTCTTGATGCTTCAATCGC 1841
|||||..|..|||||||||||||||||||||||.|.|||||.||.|||||
BL00016___leu 1792 ACGCTCCGGCTGTACGAAATGTTCATGGGACCTTTGGATGCATCGATCGC 1841
BSNT_04417___ 1842 CTGGTCTGAA--TCAGGATTAGACGGTGCGCGCCGTTTCCTTGACCGTGT 1889
|||||| || .||||..|.|||||.||.|||||.|||||||||||.||
BL00016___leu 1842 CTGGTC--AACGACAGGGCTTGACGGAGCCCGCCGCTTCCTTGACCGCGT 1889
BSNT_04417___ 1890 ATGGCGCCTATTTATTGAAGACAGCGGTGAGCTTAATGGA-AAAATCGTT 1938
||||||..|.|||||.||.||||..||.| |.||||..|| ||.||||||
BL00016___leu 1890 ATGGCGTTTGTTTATCGATGACAATGGCG-GGTTAAACGAGAAGATCGTT 1938
BSNT_04417___ 1939 GAAGGCGCTGGTGAAACATTGGAGCGCGTCTATCATGAAACGGTTATGAA 1988
|||||.||.||.|||||..|.|||||||||||.|||||||||||.|||||
BL00016___leu 1939 GAAGGAGCCGGCGAAACGCTTGAGCGCGTCTACCATGAAACGGTCATGAA 1988
BSNT_04417___ 1989 AGTCACAGACCATTATGAAGGCCTTCGTTTCAACACAGGTATTTCCCAGC 2038
|||.||.|||||||..|||||.||.||.||.||.|||||.|||||.||||
BL00016___leu 1989 AGTAACGGACCATTTCGAAGGTCTGCGCTTTAATACAGGCATTTCACAGC 2038
BSNT_04417___ 2039 TGATGGTCTTTATTAATGAAGCTTATAAAGC--AACAGAACTGCCGAAAG 2086
||||||||||.||.||||||||.|||||||| |.||| ||.|||||||
BL00016___leu 2039 TGATGGTCTTCATCAATGAAGCATATAAAGCTGATCAG--CTTCCGAAAG 2086
BSNT_04417___ 2087 AATATATGGAAGGCTTCGTGAAGCTTCTTTCTCCTGTCGCGCCACACTTA 2136
||||.|||||||||||||||||..|.|||||||||||||||||.||.||.
BL00016___leu 2087 AATACATGGAAGGCTTCGTGAAATTGCTTTCTCCTGTCGCGCCTCATTTG 2136
BSNT_04417___ 2137 GCGGAAGAGCTTTGGGAGAAGCTTGGCCATTCCGGCACAATTGCCTACGA 2186
||.||||||||.|||.|....||.||.|||...|..||.||.||.||.||
BL00016___leu 2137 GCTGAAGAGCTCTGGAACCGCCTCGGTCATGAGGAAACGATCGCGTATGA 2186
BSNT_04417___ 2187 AGCTTGGCCTGTATATGATGAAACAAAACTTGTGGATGATGAAGTTGAAA 2236
|||.||||||||.|||||||||.|.||.||.||||||||||||.||||||
BL00016___leu 2187 AGCATGGCCTGTCTATGATGAAGCGAAGCTCGTGGATGATGAAATTGAAA 2236
BSNT_04417___ 2237 TCGTTGTTCAGCTGAACGGAAAAGTAAAAGCGAAATTACAGGTTCCTGCC 2286
||||.|||||||||||||||||.||.||||||||..|..|.|||||.|||
BL00016___leu 2237 TCGTCGTTCAGCTGAACGGAAAGGTGAAAGCGAAGCTGAACGTTCCAGCC 2286
BSNT_04417___ 2287 GATGC-AACGAAAGAACAGCTGGAACAGCTTGC-TCAAGCAGATGAAAAG 2334
||.|| .|| |||||||||||.|||.||||.|| ..||.|| |||||||.
BL00016___leu 2287 GACGCGGAC-AAAGAACAGCTTGAAGAGCTGGCGAAAAACA-ATGAAAAA 2334
BSNT_04417___ 2335 GTCAAAGAGCAGCTTGAAGGCAAAACGATTCGGAAAA-TCATCGCGGTGC 2383
||.|||||.|||||.|||||.||||||| ||.||||| |.|||||.||||
BL00016___leu 2335 GTAAAAGAACAGCTAGAAGGAAAAACGA-TCAGAAAAGTGATCGCTGTGC 2383
BSNT_04417___ 2384 CTGGCACGCTTGTCAATATTGTGGCAAACTAA 2415
||||.|.||||||.||||||||.|||||.|||
BL00016___leu 2384 CTGGAAAGCTTGTAAATATTGTTGCAAATTAA 2415
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