Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04439 and BL00006

See Amino acid alignment / Visit BSNT_04439 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence dna-align/BSNT_04439___ytzC.1.5803.seq
#    -bsequence dna-align/BL00006___ytzC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04439___ytzC-BL00006___ytzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04439___ytzC-BL00006___ytzC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04439___ytzC
# 2: BL00006___ytzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 297
# Identity:     185/297 (62.3%)
# Similarity:   185/297 (62.3%)
# Gaps:          48/297 (16.2%)
# Score: 533.0
# 
#
#=======================================

BSNT_04439___      1 GTGGCAACAAGACAATCAGT---AGATGAACATCTCCAGCAATGTATGC-     46
                     .||||.|||||||||||.||   ||| |.|||||     |||.| |.|| 
BL00006___ytz      1 TTGGCTACAAGACAATCCGTCGGAGA-GCACATC-----CAAAG-AAGCG     43

BSNT_04439___     47 ---AGGCCTATGATTATGCTGAA---------GAACAGCTGAAAATCGCT     84
                        |.||.||||||||||||..|         ||  |.|||.||   || 
BL00006___ytz     44 AAGATGCTTATGATTATGCTTTATCTCAATTTGA--AACTGCAA---GC-     87

BSNT_04439___     85 TCTAAACAAGAGCATTATAACGATCAAGAATATAGTGATGCGCAAATGCA    134
                        |..||.||.|||||.||.||...|||.||.||.||||||||..||..
BL00006___ytz     88 ---AGGCAGGAACATTACAATGAGACAGAGTACAGCGATGCGCAGCTGAT    134

BSNT_04439___    135 GCTTGAAGATGCGGTAAATGCCTTGAATAAGCTATGGCTGTCGTCAAATG    184
                     |||||||.|.|||||.||||..||.||.|||||.|.|||||...|.||||
BL00006___ytz    135 GCTTGAAAACGCGGTCAATGAATTAAACAAGCTTTCGCTGTTTGCCAATG    184

BSNT_04439___    185 ATCAGCAGAGAGAACAGCTGTACAGAATGAGGCTTCAGCTTCAATCTTTG    234
                     |.|||||.||.||..|..|..||.|.|..|||||.|||||.|||.|..|.
BL00006___ytz    185 AGCAGCAAAGGGAGGAAATTCACCGCAAAAGGCTCCAGCTGCAAACCCTT    234

BSNT_04439___    235 CAAAATAATATGATCCTGCAGCACCCTCTTGAT-GTGT---AG----    273
                     |||||.||||||||.||||||        .||| ||.|   ||    
BL00006___ytz    235 CAAAACAATATGATTCTGCAG--------AGATCGTATGAAAGATGA    273


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