Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03434 and BL00001
See
Amino acid alignment /
Visit
BSNT_03434 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:25
# Commandline: needle
# -asequence dna-align/BSNT_03434___aroC.1.5803.seq
# -bsequence dna-align/BL00001___aroD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03434___aroC-BL00001___aroD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03434___aroC-BL00001___aroD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03434___aroC
# 2: BL00001___aroD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity: 493/854 (57.7%)
# Similarity: 493/854 (57.7%)
# Gaps: 175/854 (20.5%)
# Score: 1209.5
#
#
#=======================================
BSNT_03434___ 1 ------------GTGAACGTGTTAACGATTAAAGGAGTTTCCATCGGG-G 37
||||| |.|.|.|||| .||.|||.||| |
BL00001___aro 1 TTGAAGAAACTGGTGAA---------GGTCAGAGGA-ATTACATTGGGTG 40
BSNT_03434___ 38 AAGGAATGCCGAAAATCATCGTTCCGCTGATGGGAAAGACGGAAAAA--- 84
||||...|||.||||||...||.||||| .|.||||||||
BL00001___aro 41 AAGGCCGGCCAAAAATCTGTGTGCCGCT--------TGTCGGAAAAAACC 82
BSNT_03434___ 85 ----CAAATTCTGAATGAAGCAGAGGCAGTAAAATTA----------CTG 120
|.||| |.||.||||.||.||| ||| ||.
BL00001___aro 83 TTGCCCAAT--TAAAAGAAGAAGCGGC-------TTATTTTCAAACGCTT 123
BSNT_03434___ 121 AATCCGGACATTGTTGAATGGAGAGTCGACGTATTTGAAAAAGCGAATGA 170
.||.|.||.||||..||.|||.|.|..||..|.|.||||.|.|...||||
BL00001___aro 124 GATGCCGATATTGCGGAGTGGCGTGCTGATTTTTATGAAGATGTAGATGA 173
BSNT_03434___ 171 CAGAGAAGCGGTCACAAAGCTCATTTCTAAGC----TT--CGTAAATC-- 212
|...|| |||..|||..|| || ||.|||||
BL00001___aro 174 CGTTGA--------------TCAAGTCTGCGCGGCATTGGCGGAAATCCG 209
BSNT_03434___ 213 ------TTTAGAAGACA---AGCT-ATTTCTATTTACATTCAGAACCCAC 252
||||.|.|||| .||| ||| ||.||.|||.|.|.|..|
BL00001___aro 210 CGGCCTTTTAAAGGACACTCCGCTCATT----TTCACTTTCCGCAGCGCC 255
BSNT_03434___ 253 AAAGAGGGCGGGAG-CATGGAGAT--GGACGAAAGCTC-CTATCTTGCTT 298
...||.||| |||| .|..||||| |.|| |||.| .|||.||.|||
BL00001___aro 256 GCCGAAGGC-GGAGAAAAAGAGATCAGCAC---AGCGCGATATTTTTCTT 301
BSNT_03434___ 299 TGCTGGAATCGGCAATCCAAACAAAAGACAT--CGATCTGATAGATATCG 346
|....|||.|||...|..|||| |.|.|.| ||||.||||.|||||||
BL00001___aro 302 TAAATGAAGCGGTTGTTAAAAC--AGGGCTTGCCGATGTGATTGATATCG 349
BSNT_03434___ 347 AATTATTTTCA-----GGAGATGCAAATGTAAAGGCGTTAGTATCGCTGG 391
| ..|.|||| |.||| ||||.|| |||| ||||||
BL00001___aro 350 A--GCTGTTCAATGACGAAGA-GCAAGTG-AAAG----------CGCTGG 385
BSNT_03434___ 392 CGGAAGAAA--ACAACGTCTAT---------GTGGTGATGTCAAATCACG 430
.|||| |.| |||..||| || |||.|.||.||.|||||.|
BL00001___aro 386 TGGAA-ACAGCACATGGTC-ATGAAGTGTCCGTGATTATATCTAATCATG 433
BSNT_03434___ 431 ACTTTGAAAAAACGCCTTCGAAAGATGAGATTCTTTCAAGGCTTCGAAAA 480
|.||||||||.||.||..|...|||.||.|||.||||..|..|.||||||
BL00001___aro 434 ATTTTGAAAAGACACCAGCTGCAGAAGAAATTGTTTCCCGTTTGCGAAAA 483
BSNT_03434___ 481 ATGCAGGAATTAGGCGCGCATATTCCAAAAATGGCTGTCATGCC--AAAT 528
...|||||||||||.||..||.|.||.|||||.||.||.||||| |||
BL00001___aro 484 GCACAGGAATTAGGGGCTGATCTGCCTAAAATCGCGGTGATGCCGGAAA- 532
BSNT_03434___ 529 GATACTGGAGATCTCCTAACG-CTGCTTGATGCGACGTATACAATGAAAA 577
..||.|..|||.| ||..|| ||||||||.||.||.|.|||.|||||..
BL00001___aro 533 -CCACGGCTGATGT-CTTGCGTCTGCTTGAAGCCACTTGTACGATGAATG 580
BSNT_03434___ 578 CAAAATATGCAGACCGTCCCATTATTACAATGTCAATGG-CTGCAACAGG 626
..||.||||||||.||.||.||||||||.|||||||||| |.|||| |||
BL00001___aro 581 AGAAGTATGCAGATCGGCCGATTATTACGATGTCAATGGCCGGCAA-AGG 629
BSNT_03434___ 627 GCTTATCAGCAGGCTGAGC-GGTGAGGTTTTTGGATCGGC-TTGTACTTT 674
..|.||||||.|.||| || ||.|||||.||.||.||.|| .|| ||.||
BL00001___aro 630 TATCATCAGCCGCCTG-GCGGGCGAGGTATTCGGTTCAGCAATG-ACGTT 677
BSNT_03434___ 675 TGGAGCTGGAGAAG-AGGCGTCTGCACCAGGCCAAATTCCTGTTTCTGAG 723
.||.||.|.| ||| |.||.||.|||||.||.||.|||.|.|.|..||||
BL00001___aro 678 CGGTGCCGCA-AAGAAAGCTTCAGCACCGGGGCAGATTGCAGCTGGTGAG 726
BSNT_03434___ 724 CT-AAGGAGTGTCTTAGATATTTTGCA--------TAAAAACACACGGGG 764
|| ||||| ..||.|..||||.||||| ||.||
BL00001___aro 727 CTCAAGGA-AATCCTTCATATATTGCATCGCAATTTATAA---------- 765
BSNT_03434___ 765 GTAG 768
BL00001___aro 765 ---- 765
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.